Learning Anytime Predictions in Neural Networks via Adaptive Loss Balancing

This work considers the trade-off between accuracy and test-time computational cost of deep neural networks (DNNs) via \emph{anytime} predictions from auxiliary predictions. Specifically, we optimize auxiliary losses jointly in an \emph{adaptive} weighted sum, where the weights are inversely proportional to average of each loss. Intuitively, this balances the losses to have the same scale. We demonstrate theoretical considerations that motivate this approach from multiple viewpoints, including connecting it to optimizing the geometric mean of the expectation of each loss, an objective that ignores the scale of losses. Experimentally, the adaptive weights induce more competitive anytime predictions on multiple recognition data-sets and models than non-adaptive approaches including weighing all losses equally. In particular, anytime neural networks (ANNs) can achieve the same accuracy faster using adaptive weights on a small network than using static constant weights on a large one. For problems with high performance saturation, we also show a sequence of exponentially deepening ANNscan achieve near-optimal anytime results at any budget, at the cost of a const fraction of extra computation

Vision and Learning for Deliberative Monocular Cluttered Flight

Cameras provide a rich source of information while being passive, cheap and lightweight for small and medium Unmanned Aerial Vehicles (UAVs). In this work we present the first implementation of receding horizon control, which is widely used in ground vehicles, with monocular vision as the only sensing mode for autonomous UAV flight in dense clutter. We make it feasible on UAVs via a number of contributions: novel coupling of perception and control via relevant and diverse, multiple interpretations of the scene around the robot, leveraging recent advances in machine learning to showcase anytime budgeted cost-sensitive feature selection, and fast non-linear regression for monocular depth prediction. We empirically demonstrate the efficacy of our novel pipeline via real world experiments of more than 2 kms through dense trees with a quadrotor built from off-the-shelf parts. Moreover our pipeline is designed to combine information from other modalities like stereo and lidar as well if available

Quadtree Generating Networks: Efficient Hierarchical Scene Parsing with Sparse Convolutions

Semantic segmentation with Convolutional Neural Networks is a memory-intensive task due to the high spatial resolution of feature maps and output predictions. In this paper, we present Quadtree Generating Networks (QGNs), a novel approach able to drastically reduce the memory footprint of modern semantic segmentation networks. The key idea is to use quadtrees to represent the predictions and target segmentation masks instead of dense pixel grids. Our quadtree representation enables hierarchical processing of an input image, with the most computationally demanding layers only being used at regions in the image containing boundaries between classes. In addition, given a trained model, our representation enables flexible inference schemes to trade-off accuracy and computational cost, allowing the network to adapt in constrained situations such as embedded devices. We demonstrate the benefits of our approach on the Cityscapes, SUN-RGBD and ADE20k datasets. On Cityscapes, we obtain an relative 3% mIoU improvement compared to a dilated network with similar memory consumption; and only receive a 3% relative mIoU drop compared to a large dilated network, while reducing memory consumption by over 4$\times$.Comment: Accepted for IEEE Winter Conference on Applications of Computer Vision (WACV) 202

Learning optimization models in the presence of unknown relations

In a sequential auction with multiple bidding agents, it is highly challenging to determine the ordering of the items to sell in order to maximize the revenue due to the fact that the autonomy and private information of the agents heavily influence the outcome of the auction. The main contribution of this paper is two-fold. First, we demonstrate how to apply machine learning techniques to solve the optimal ordering problem in sequential auctions. We learn regression models from historical auctions, which are subsequently used to predict the expected value of orderings for new auctions. Given the learned models, we propose two types of optimization methods: a black-box best-first search approach, and a novel white-box approach that maps learned models to integer linear programs (ILP) which can then be solved by any ILP-solver. Although the studied auction design problem is hard, our proposed optimization methods obtain good orderings with high revenues. Our second main contribution is the insight that the internal structure of regression models can be efficiently evaluated inside an ILP solver for optimization purposes. To this end, we provide efficient encodings of regression trees and linear regression models as ILP constraints. This new way of using learned models for optimization is promising. As the experimental results show, it significantly outperforms the black-box best-first search in nearly all settings.Comment: 37 pages. Working pape

Classifying distinct data types: textual streams protein sequences and genomic variants

Artificial Intelligence (AI) is an interdisciplinary field combining different research areas with the end goal to automate processes in the everyday life and industry. The fundamental components of AI models are an “intelligent” model and a functional component defined by the end-application. That is, an intelligent model can be a statistical model that can recognize patterns in data instances to distinguish differences in between these instances. For example, if the AI is applied in car manufacturing, based on an image of a part of a car, the model can categorize if the car part is in the front, middle or rear compartment of the car, as a human brain would do. For the same example application, the statistical model informs a mechanical arm, the functional component, for the current car compartment and the arm in turn assembles this compartment, of the car, based on predefined instructions, likely as a human hand would follow human brain neural signals. A crucial step of AI applications is the classification of input instances by the intelligent model. The classification step in the intelligent model pipeline allows the subsequent steps to act in similar fashion for instances belonging to the same category. We define as classification the module of the intelligent model, which categorizes the input instances based on predefined human-expert or data-driven produced patterns of the instances. Irrespectively of the method to find patterns in data, classification is composed of four distinct steps: (i) input representation, (ii) model building (iii) model prediction and (iv) model assessment. Based on these classification steps, we argue that applying classification on distinct data types holds different challenges. In this thesis, I focus on challenges for three distinct classification scenarios: (i) Textual Streams: how to advance the model building step, commonly used for static distribution of data, to classify textual posts with transient data distribution? (ii) Protein Prediction: which biologically meaningful information can be used in the input representation step to overcome the limited training data challenge? (iii) Human Variant Pathogenicity Prediction: how to develop a classification system for functional impact of human variants, by providing standardized and well accepted evidence for the classification outcome and thus enabling the model assessment step? To answer these research questions, I present my contributions in classifying these different types of data: temporalMNB: I adapt the sequential prediction with expert advice paradigm to optimally aggregate complementary distributions to enhance a Naive Bayes model to adapt on drifting distribution of the characteristics of the textual posts. dom2vec: our proposal to learn embedding vectors for the protein domains using self-supervision. Based on the high performance achieved by the dom2vec embeddings in quantitative intrinsic assessment on the captured biological information, I provide example evidence for an analogy between the local linguistic features in natural languages and the domain structure and function information in domain architectures. Last, I describe GenOtoScope bioinformatics software tool to automate standardized evidence-based criteria for pathogenicity impact of variants associated with hearing loss. Finally, to increase the practical use of our last contribution, I develop easy-to-use software interfaces to be used, in research settings, by clinical diagnostics personnel.Künstliche Intelligenz (KI) ist ein interdisziplinäres Gebiet, das verschiedene Forschungsbereiche mit dem Ziel verbindet, Prozesse im Alltag und in der Industrie zu automatisieren. Die grundlegenden Komponenten von KI-Modellen sind ein “intelligentes” Modell und eine durch die Endanwendung definierte funktionale Komponente. Das heißt, ein intelligentes Modell kann ein statistisches Modell sein, das Muster in Dateninstanzen erkennen kann, um Unterschiede zwischen diesen Instanzen zu unterscheiden. Wird die KI beispielsweise in der Automobilherstellung eingesetzt, kann das Modell auf der Grundlage eines Bildes eines Autoteils kategorisieren, ob sich das Autoteil im vorderen, mittleren oder hinteren Bereich des Autos befindet, wie es ein menschliches Gehirn tun würde. Bei der gleichen Beispielanwendung informiert das statistische Modell einen mechanischen Arm, die funktionale Komponente, über den aktuellen Fahrzeugbereich, und der Arm wiederum baut diesen Bereich des Fahrzeugs auf der Grundlage vordefinierter Anweisungen zusammen, so wie eine menschliche Hand den neuronalen Signalen des menschlichen Gehirns folgen würde. Ein entscheidender Schritt bei KI-Anwendungen ist die Klassifizierung von Eingabeinstanzen durch das intelligente Modell. Unabhängig von der Methode zum Auffinden von Mustern in Daten besteht die Klassifizierung aus vier verschiedenen Schritten: (i) Eingabedarstellung, (ii) Modellbildung, (iii) Modellvorhersage und (iv) Modellbewertung. Ausgehend von diesen Klassifizierungsschritten argumentiere ich, dass die Anwendung der Klassifizierung auf verschiedene Datentypen unterschiedliche Herausforderungen mit sich bringt. In dieser Arbeit konzentriere ich uns auf die Herausforderungen für drei verschiedene Klassifizierungsszenarien: (i) Textdatenströme: Wie kann der Schritt der Modellerstellung, der üblicherweise für eine statische Datenverteilung verwendet wird, weiterentwickelt werden, um die Klassifizierung von Textbeiträgen mit einer instationären Datenverteilung zu erlernen? (ii) Proteinvorhersage: Welche biologisch sinnvollen Informationen können im Schritt der Eingabedarstellung verwendet werden, um die Herausforderung der begrenzten Trainingsdaten zu überwinden? (iii) Vorhersage der Pathogenität menschlicher Varianten: Wie kann ein Klassifizierungssystem für die funktionellen Auswirkungen menschlicher Varianten entwickelt werden, indem standardisierte und anerkannte Beweise für das Klassifizierungsergebnis bereitgestellt werden und somit der Schritt der Modellbewertung ermöglicht wird? Um diese Forschungsfragen zu beantworten, stelle ich meine Beiträge zur Klassifizierung dieser verschiedenen Datentypen vor: temporalMNB: Verbesserung des Naive-Bayes-Modells zur Klassifizierung driftender Textströme durch Ensemble-Lernen. dom2vec: Lernen von Einbettungsvektoren für Proteindomänen durch Selbstüberwachung. Auf der Grundlage der berichteten Ergebnisse liefere ich Beispiele für eine Analogie zwischen den lokalen linguistischen Merkmalen in natürlichen Sprachen und den Domänenstruktur- und Funktionsinformationen in Domänenarchitekturen. Schließlich beschreibe ich ein bioinformatisches Softwaretool, GenOtoScope, zur Automatisierung standardisierter evidenzbasierter Kriterien für die orthogenitätsauswirkungen von Varianten, die mit angeborener Schwerhörigkeit in Verbindung stehen

Utility-Based Data Mining Workshop Chairs:

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DNA Sequence Classification: It’s Easier Than You Think: An open-source k-mer based machine learning tool for fast and accurate classification of a variety of genomic datasets

Supervised classification of genomic sequences is a challenging, well-studied problem with a variety of important applications. We propose an open-source, supervised, alignment-free, highly general method for sequence classification that operates on k-mer proportions of DNA sequences. This method was implemented in a fully standalone general-purpose software package called Kameris, publicly available under a permissive open-source license. Compared to competing software, ours provides key advantages in terms of data security and privacy, transparency, and reproducibility. We perform a detailed study of its accuracy and performance on a wide variety of classification tasks, including virus subtyping, taxonomic classification, and human haplogroup assignment. We demonstrate the success of our method on whole mitochondrial, nuclear, plastid, plasmid, and viral genomes, as well as randomly sampled eukaryote genomes and transcriptomes. Further, we perform head-to-head evaluations on the tasks of HIV-1 virus subtyping and bacterial taxonomic classification with a number of competing state-of-the-art software solutions, and show that we match or exceed all other tested software in terms of accuracy and speed