Information Surfaces in Systems Biology and Applications to Engineering Sustainable Agriculture

Systems biology of plants offers myriad opportunities and many challenges in modeling. A number of technical challenges stem from paucity of computational methods for discovery of the most fundamental properties of complex dynamical systems. In systems engineering, eigen-mode analysis have proved to be a powerful approach. Following this philosophy, we introduce a new theory that has the benefits of eigen-mode analysis, while it allows investigation of complex dynamics prior to estimation of optimal scales and resolutions. Information Surfaces organizes the many intricate relationships among "eigen-modes" of gene networks at multiple scales and via an adaptable multi-resolution analytic approach that permits discovery of the appropriate scale and resolution for discovery of functions of genes in the model plant Arabidopsis. Applications are many, and some pertain developments of crops that sustainable agriculture requires.Comment: 24 Pages, DoCEIS 1

Deep Feature-based Face Detection on Mobile Devices

We propose a deep feature-based face detector for mobile devices to detect user's face acquired by the front facing camera. The proposed method is able to detect faces in images containing extreme pose and illumination variations as well as partial faces. The main challenge in developing deep feature-based algorithms for mobile devices is the constrained nature of the mobile platform and the non-availability of CUDA enabled GPUs on such devices. Our implementation takes into account the special nature of the images captured by the front-facing camera of mobile devices and exploits the GPUs present in mobile devices without CUDA-based frameorks, to meet these challenges.Comment: ISBA 201

A Comparison of Big Data Frameworks on a Layered Dataflow Model

In the world of Big Data analytics, there is a series of tools aiming at simplifying programming applications to be executed on clusters. Although each tool claims to provide better programming, data and execution models, for which only informal (and often confusing) semantics is generally provided, all share a common underlying model, namely, the Dataflow model. The Dataflow model we propose shows how various tools share the same expressiveness at different levels of abstraction. The contribution of this work is twofold: first, we show that the proposed model is (at least) as general as existing batch and streaming frameworks (e.g., Spark, Flink, Storm), thus making it easier to understand high-level data-processing applications written in such frameworks. Second, we provide a layered model that can represent tools and applications following the Dataflow paradigm and we show how the analyzed tools fit in each level.Comment: 19 pages, 6 figures, 2 tables, In Proc. of the 9th Intl Symposium on High-Level Parallel Programming and Applications (HLPP), July 4-5 2016, Muenster, German