Early detection of forest stress from European spruce bark beetle attack, and a new vegetation index: Normalized distance red & SWIR (NDRS)

The European spruce bark beetle (Ips typographus [L.]) is one of the most damaging pest insects of European spruce forests. A crucial measure in pest control is the removal of infested trees before the beetles leave the bark, which generally happens before the end of June. However, stressed tree crowns do not show any significant color changes in the visible spectrum at this early-stage of infestation, making early detection difficult. In order to detect the related forest stress at an early stage, we investigated the differences in radar and spectral signals of healthy and stressed trees. How the characteristics of stressed trees changed over time was analyzed for the whole vegetation season, which covered the period before attacks (April), early-stage infestation ('green-attacks', May to July), and middle to late-stage infestation (August to October). The results show that spectral differences already existed at the beginning of the vegetation season, before the attacks. The spectral separability between the healthy and infested samples did not change significantly during the 'green-attack' stage. The results indicate that the trees were stressed before the attacks and had spectral signatures that differed from healthy ones. These stress-induced spectral changes could be more efficient indicators of early infestations than the 'green-attack' symptoms.In this study we used Sentinel-1 and 2 images of a test site in southern Sweden from April to October in 2018 and 2019. The red and SWIR bands from Sentinel-2 showed the highest separability of healthy and stressed samples. The backscatter from Sentinel-1 and additional bands from Sentinel-2 contributed only slightly in the Random Forest classification models. We therefore propose the Normalized Distance Red & SWIR (NDRS) index as a new index based on our observations and the linear relationship between the red and SWIR bands. This index identified stressed forest with accuracies from 0.80 to 0.88 before the attacks, from 0.80 to 0.82 in the early-stage infestation, and from 0.81 to 0.91 in middle- and late-stage infestations. These accuracies are higher than those attained by established vegetation indices aimed at 'green-attack' detection, such as the Normalized Difference Water Index, Ratio Drought Index, and Disease Stress Water Index. By using the proposed method, we highlight the potential of using NDRS with Sentinel-2 images to estimate forest vulnerability to European spruce bark beetle attacks early in the vegetation season

Early Detection of Bark Beetle Attack Using Remote Sensing and Machine Learning: A Review

Bark beetle outbreaks can result in a devastating impact on forest ecosystem processes, biodiversity, forest structure and function, and economies. Accurate and timely detection of bark beetle infestations is crucial to mitigate further damage, develop proactive forest management activities, and minimize economic losses. Incorporating remote sensing (RS) data with machine learning (ML) (or deep learning (DL)) can provide a great alternative to the current approaches that rely on aerial surveys and field surveys, which are impractical over vast geographical regions. This paper provides a comprehensive review of past and current advances in the early detection of bark beetle-induced tree mortality from three key perspectives: bark beetle & host interactions, RS, and ML/DL. We parse recent literature according to bark beetle species & attack phases, host trees, study regions, imagery platforms & sensors, spectral/spatial/temporal resolutions, spectral signatures, spectral vegetation indices (SVIs), ML approaches, learning schemes, task categories, models, algorithms, classes/clusters, features, and DL networks & architectures. This review focuses on challenging early detection, discussing current challenges and potential solutions. Our literature survey suggests that the performance of current ML methods is limited (less than 80%) and depends on various factors, including imagery sensors & resolutions, acquisition dates, and employed features & algorithms/networks. A more promising result from DL networks and then the random forest (RF) algorithm highlighted the potential to detect subtle changes in visible, thermal, and short-wave infrared (SWIR) spectral regions.Comment: Under review, 33 pages, 5 figures, 8 Table

Monitoring Bark Beetle Forest Damage in Central Europe. A Remote Sensing Approach Validated with Field Data

Over the last decades, climate change has triggered an increase in the frequency of sprucebark beetle (Ips typographusL.) in Central Europe. More than 50% of forests in the Czech Republic areseriously threatened by this pest, leading to high ecological and economic losses. The exponentialincrease of bark beetle infestation hinders the implementation of costly field campaigns to prevent andmitigate its effects. Remote sensing may help to overcome such limitations as it provides frequent andspatially continuous data on vegetation condition. Using Sentinel-2 images as main input, two modelshave been developed to test the ability of this data source to map bark beetle damage and severity.All models were based on a change detection approach, and required the generation of previous forestmask and dominant species maps. The first damage mapping model was developed for 2019 and2020, and it was based on bi-temporal regressions in spruce areas to estimate forest vitality and barkbeetle damage. A second model was developed for 2020 considering all forest area, but excludingclear-cuts and completely dead areas, in order to map only changes in stands dominated by alivetrees. The three products were validated with in situ data. All the maps showed high accuracies (acc>0.80). Accuracy was higher than 0.95 and F1-score was higher than 0.88 for areas with high severity,with omission errors under 0.09 in all cases. This confirmed the ability of all the models to detectbark beetle attack at the last phases. Areas with no damage or low severity showed more complexresults. The no damage category yielded greater commission errors and relative bias (CEs=0.30-0.42,relB=0.42-0.51). The similar results obtained for 2020 leaving out clear-cuts and dead trees provedthat the proposed methods could be used to help forest managers fight bark beetle pests. These bioticdamage products based on Sentinel-2 can be set up for any location to derive regular forest vitalitymaps and inform of early damage.O

Normalized Projected Red & SWIR (NPRS): A New Vegetation Index for Forest Health Estimation and Its Application on Spruce Bark Beetle Attack Detection

Due to the ongoing global warming, European spruce bark beetles has become a serious threat to the spruce forests in Europe and caused serious environmental and economic issues. This study proposes a new vegetation index, Normalized Projected Red & SWIR (NPRS), for detection of spruce bark beetle attacks. 29 healthy and 24 bark beetle attacked plots in southern Sweden were used for evaluating the classification accuracy using NPRS at early-, intermediate- and late-stage attacks. The obtained kappa coefficients were 0.73, 0.80 and 0.88, respectively. It was concluded that the NPRS is a feasible method for continuous bark beetle mapping over large areas

Assessing the detectability of European spruce bark beetle green attack in multispectral drone images with high spatial- and temporal resolutions

Detecting disease- or insect-infested forests as early as possible is a classic application of remote sensing. Under conditions of climate change and global warming, outbreaks of the European spruce bark beetle (Ips typographus, L.) are threatening spruce forests and the related timber industry across Europe, and early detection of infestations is important for damage control. Infested trees without visible discoloration (green attack) have been identified using multispectral images, but how early green attacks can be detected is still unknown. This study aimed to determine when infested trees start to show an abnormal spectral response compared with healthy trees, and to quantify the detectability of infested trees during the infestation process. Pheromone bags were used to attract bark beetles in a controlled experiment, and subsequent infestations were assessed in the field on a weekly basis. In total, 977 trees were monitored, including 208 attacked trees. Multispectral drone images were obtained before and during the insect attacks, representing different periods of infestation. Individual tree crowns (ITC) were delineated by marker-controlled watershed segmentation, and the average reflectance of ITCs was analyzed based on the duration of infestation. The detectability of green attacks and driving factors were examined. We propose new Multiple Ratio Disease-Water Stress Indices (MR-DSWIs) as vegetation indices (VI) for detecting infestations. We defined a VI range of 5-95% as a healthy tree, and a VI value outside that range as an infested tree. Detection rates using multispectral images were always higher than discoloration rates observed in the field, and the newly proposed MR-DSWIs detected more infested trees than the established VIs. Infestations were detectable at 5 and 10 weeks after an attack at a rate of 15% and 90%, respectively, from the multispectral drone images. Weeks 5-10 of infestation therefore represent a suitable period for using the proposed methodology to map infestation at an early stage

Early detection of pine wilt disease tree candidates using time-series of spectral signatures

Pine wilt disease (PWD), caused by pine wood nematode (PWN), poses a tremendous threat to global pine forests because it can result in rapid and widespread infestations within months, leading to large-scale tree mortality. Therefore, the implementation of preventive measures relies on early detection of PWD. Unmanned aerial vehicle (UAV)-based hyperspectral images (HSI) can detect tree-level changes and are thus an effective tool for forest change detection. However, previous studies mainly used single-date UAV-based HSI data, which could not monitor the temporal changes of disease distribution and determine the optimal detection period. To achieve these purposes, multi-temporal data is required. In this study, Pinus koraiensis stands were surveyed in the field from May to October during an outbreak of PWD. Concurrently, multi-temporal UAV-based red, green, and blue bands (RGB) and HSI data were also obtained. During the survey, 59 trees were confirmed to be infested with PWD, and 59 non-infested trees were used as control. Spectral features of each tree crown, such as spectral reflectance, first and second-order spectral derivatives, and vegetation indices (VIs), were analyzed to identify those useful for early monitoring of PWD. The Random Forest (RF) classification algorithm was used to examine the separability between the two groups of trees (control and infested trees). The results showed that: (1) the responses of the tree crown spectral features to PWD infestation could be detected before symptoms were noticeable in RGB data and field surveys; (2) the spectral derivatives were the most discriminable variables, followed by spectral reflectance and VIs; (3) based on the HSI data from July to October, the two groups of trees were successfully separated using the RF classifier, with an overall classification accuracy of 0.75–0.95. Our results illustrate the potential of UAV-based HSI for PWD early monitoring

Can a remote sensing approach with hyperspectral data provide early detection and mapping of spatial patterns of black bear bark stripping in coast redwoods?

The prevalence of black bear (Ursus americanus) bark stripping in commercial redwood (Sequoia sempervirens) timer stands has been increasing in recent years. This stripping is a threat to commercial timber production because of the deleterious effects on redwood tree fitness. This study sought to unveil a remote sensing method to detect these damaged trees early and map their spatial patterns. By developing a timely monitoring method, forest timber companies can manipulate their timber harvesting routines to adapt to the consequences of the problem. We explored the utility of high spatial resolution UAV-collected hyperspectral imagery as a means for early detection of individual trees stripped by black bears. A hyperspectral sensor was used to capture ultra-high spatial and spectral information pertaining to redwood trees with no damage, those that have been recently attacked by bears, and those with old bear damage. This spectral information was assessed using the Jeffries-Matusita (JM) distance to determine regions along the electromagnetic spectrum that are useful for discerning these three-health classes. While we were able to distinguish healthy trees from trees with old damage, we were unable to distinguish healthy trees from recently damaged trees due to the inherent characteristics of redwood tree growth and the subtle spectral changes within individual tree crowns for the time period assessed. The results, however, showed that with further assessment, a time window may be identified that informs damage before trees completely lose value

Analysis of Unmanned Aerial System-Based CIR Images in Forestry—A New Perspective to Monitor Pest Infestation Levels

The detection of pest infestation is an important aspect of forest management. In the case of the oak splendour beetle (Agrilus biguttatus) infestation, the affected oaks (Quercus sp.) show high levels of defoliation and altered canopy reflection signature. These critical features can be identified in high-resolution colour infrared (CIR) images of the tree crown and branches level captured by Unmanned Aerial Systems (UAS). In this study, we used a small UAS equipped with a compact digital camera which has been calibrated and modified to record not only the visual but also the near infrared reflection (NIR) of possibly infested oaks. The flight campaigns were realized in August 2013, covering two study sites which are located in a rural area in western Germany. Both locations represent small-scale, privately managed commercial forests in which oaks are economically valuable species. Our workflow includes the CIR/NIR image acquisition, mosaicking, georeferencing and pixel-based image enhancement followed by object-based image classification techniques. A modified Normalized Difference Vegetation Index (NDVImod) derived classification was used to distinguish between five vegetation health classes, i.e., infested, healthy or dead branches, other vegetation and canopy gaps. We achieved an overall Kappa Index of Agreement (KIA) of 0.81 and 0.77 for each study site, respectively. This approach offers a low-cost alternative to private forest owners who pursue a sustainable management strategy

Detection of susceptible Norway spruce to bark beetle attack using PlanetScope multispectral imagery

Climate change-related acute or long-term drought stress can weaken forest ecosystems and result in widespread bark beetle infestations. Eurasian spruce bark beetle (Ips typographus L.) infestations have been occurring in Norway spruce [Picea abies (L.) Karst.]-dominated forests in central Europe including the Czechia. These infestations appear regularly, especially in homogeneous spruce stands, and the impact varies with the climate-induced water stress conditions. The removal of infected trees before the beetles leave the bark is an important step in forest pest management. Early identification of susceptible trees to infestations is also very important but quite challenging since stressed tree-tops show no sign of discolouration in the visible spectrum. We investigated if individual spectral bandwidths or developed spectral vegetation indices (SVIs), can be used to differentiate non-attacked trees, assumed to be healthy, from trees susceptible to attacks in the later stages of a growing season. And, how the temporal-scale patterns of individual bands and developed SVIs of susceptible trees to attacks, driven by changes in spectral characteristics of trees, behave differently than those patterns observed for healthy trees. The multispectral imagery from the PlanetScope satellite coupled with field data were used to statistically test the competency of the individual band and/or developed SVIs to differentiate two designated classes of healthy and susceptible trees. We found significant differences between SVIs of the susceptible and healthy spruce forests using the Enhanced Vegetation Index (EVI) and Visible Atmospherically Resistant Index (VARI). The accuracy for both indices ranged from 0.7 to 0.78; the highest among all examined indices. The results indicated that the spectral differences between the healthy and susceptible trees were present at the beginning of the growing season before the attacks. The existing spectral differences, likely caused by water-stress stimuli such as droughts, may be a key to detecting forests susceptible to early infestations. Our introduced methodology can also be applied in future research, using new generations of the PlanetScope imagery, to assess forests susceptibility to bark beetle infestations early in the growing season

Evaluating the Utility of Object-Based Image Analysis for Ecological Monitoring of Pinon-Juniper Mortality

Forested ecosystems in the American Southwest are experiencing change at an unprecedented rate, largely due to mortality events triggered by increased temperatures, drought, and insect infestations. Large-scale changes in the distributions of these ecosystems can potentially alter regional-scale carbon, water and energy dynamics. One biome in particular that has experienced increased mortality and altered forest composition over the past 30 years are Piñon-Juniper woodlands (Pinus edulis, Juniperus spp.) in the American Southwest. New fields of study, in particular, Remote Sensing, are applying and adapting traditional methods for ecological monitoring of these woodlands. Remote sensing offers the potential to synoptically classify and quantify specific tree species within mixed communities such as Piñon-Juniper (PJ) woodlands. This thesis tests the utility and reliability of an Object-Based Image Analysis (OBIA) classification applied to Very-High Resolution (VHR) imagery fused with historical National Agricultural Imagery Program (NAIP) imagery for detecting and quantifying piñon-pine mortality trends on a plateau of PJ woodland in Central New Mexico. Specifically, the research seeks to determine: (1) the accuracy of OBIA applied to VHR imagery for quantifying live PJ and dead piñon; and (2) the potential of NAIP data for creating an ecological timeline of forest mortality from 2005-2014. The OBIA process generated an overall classification accuracy of over 70%, whereas the time-series analysis using NAIP resulted in an overestimation of piñon mortality when compared to two sample-plots at the region