DISPATCH: A Numerical Simulation Framework for the Exa-scale Era. I. Fundamentals

We introduce a high-performance simulation framework that permits the semi-independent, task-based solution of sets of partial differential equations, typically manifesting as updates to a collection of `patches' in space-time. A hybrid MPI/OpenMP execution model is adopted, where work tasks are controlled by a rank-local `dispatcher' which selects, from a set of tasks generally much larger than the number of physical cores (or hardware threads), tasks that are ready for updating. The definition of a task can vary, for example, with some solving the equations of ideal magnetohydrodynamics (MHD), others non-ideal MHD, radiative transfer, or particle motion, and yet others applying particle-in-cell (PIC) methods. Tasks do not have to be grid-based, while tasks that are, may use either Cartesian or orthogonal curvilinear meshes. Patches may be stationary or moving. Mesh refinement can be static or dynamic. A feature of decisive importance for the overall performance of the framework is that time steps are determined and applied locally; this allows potentially large reductions in the total number of updates required in cases when the signal speed varies greatly across the computational domain, and therefore a corresponding reduction in computing time. Another feature is a load balancing algorithm that operates `locally' and aims to simultaneously minimise load and communication imbalance. The framework generally relies on already existing solvers, whose performance is augmented when run under the framework, due to more efficient cache usage, vectorisation, local time-stepping, plus near-linear and, in principle, unlimited OpenMP and MPI scaling.Comment: 17 pages, 8 figures. Accepted by MNRA

Towards Loosely-Coupled Programming on Petascale Systems

We have extended the Falkon lightweight task execution framework to make loosely coupled programming on petascale systems a practical and useful programming model. This work studies and measures the performance factors involved in applying this approach to enable the use of petascale systems by a broader user community, and with greater ease. Our work enables the execution of highly parallel computations composed of loosely coupled serial jobs with no modifications to the respective applications. This approach allows a new-and potentially far larger-class of applications to leverage petascale systems, such as the IBM Blue Gene/P supercomputer. We present the challenges of I/O performance encountered in making this model practical, and show results using both microbenchmarks and real applications from two domains: economic energy modeling and molecular dynamics. Our benchmarks show that we can scale up to 160K processor-cores with high efficiency, and can achieve sustained execution rates of thousands of tasks per second.Comment: IEEE/ACM International Conference for High Performance Computing, Networking, Storage and Analysis (SuperComputing/SC) 200

Many-Task Computing and Blue Waters

This report discusses many-task computing (MTC) generically and in the context of the proposed Blue Waters systems, which is planned to be the largest NSF-funded supercomputer when it begins production use in 2012. The aim of this report is to inform the BW project about MTC, including understanding aspects of MTC applications that can be used to characterize the domain and understanding the implications of these aspects to middleware and policies. Many MTC applications do not neatly fit the stereotypes of high-performance computing (HPC) or high-throughput computing (HTC) applications. Like HTC applications, by definition MTC applications are structured as graphs of discrete tasks, with explicit input and output dependencies forming the graph edges. However, MTC applications have significant features that distinguish them from typical HTC applications. In particular, different engineering constraints for hardware and software must be met in order to support these applications. HTC applications have traditionally run on platforms such as grids and clusters, through either workflow systems or parallel programming systems. MTC applications, in contrast, will often demand a short time to solution, may be communication intensive or data intensive, and may comprise very short tasks. Therefore, hardware and software for MTC must be engineered to support the additional communication and I/O and must minimize task dispatch overheads. The hardware of large-scale HPC systems, with its high degree of parallelism and support for intensive communication, is well suited for MTC applications. However, HPC systems often lack a dynamic resource-provisioning feature, are not ideal for task communication via the file system, and have an I/O system that is not optimized for MTC-style applications. Hence, additional software support is likely to be required to gain full benefit from the HPC hardware

Bridging the Gap between Application and Solid-State-Drives

Data storage is one of the important and often critical parts of the computing system in terms of performance, cost, reliability, and energy. Numerous new memory technologies, such as NAND flash, phase change memory (PCM), magnetic RAM (STT-RAM) and Memristor, have emerged recently. Many of them have already entered the production system. Traditional storage optimization and caching algorithms are far from optimal because storage I/Os do not show simple locality. To provide optimal storage we need accurate predictions of I/O behavior. However, the workloads are increasingly dynamic and diverse, making the long and short time I/O prediction challenge. Because of the evolution of the storage technologies and the increasing diversity of workloads, the storage software is becoming more and more complex. For example, Flash Translation Layer (FTL) is added for NAND-flash based Solid State Disks (NAND-SSDs). However, it introduces overhead such as address translation delay and garbage collection costs. There are many recent studies aim to address the overhead. Unfortunately, there is no one-size-fits-all solution due to the variety of workloads. Despite rapidly evolving in storage technologies, the increasing heterogeneity and diversity in machines and workloads coupled with the continued data explosion exacerbate the gap between computing and storage speeds. In this dissertation, we improve the data storage performance from both top-down and bottom-up approach. First, we will investigate exposing the storage level parallelism so that applications can avoid I/O contentions and workloads skew when scheduling the jobs. Second, we will study how architecture aware task scheduling can improve the performance of the application when PCM based NVRAM are equipped. Third, we will develop an I/O correlation aware flash translation layer for NAND-flash based Solid State Disks. Fourth, we will build a DRAM-based correlation aware FTL emulator and study the performance in various filesystems

Building Computing-As-A-Service Mobile Cloud System

The last five years have witnessed the proliferation of smart mobile devices, the explosion of various mobile applications and the rapid adoption of cloud computing in business, governmental and educational IT deployment. There is also a growing trends of combining mobile computing and cloud computing as a new popular computing paradigm nowadays. This thesis envisions the future of mobile computing which is primarily affected by following three trends: First, servers in cloud equipped with high speed multi-core technology have been the main stream today. Meanwhile, ARM processor powered servers is growingly became popular recently and the virtualization on ARM systems is also gaining wide ranges of attentions recently. Second, high-speed internet has been pervasive and highly available. Mobile devices are able to connect to cloud anytime and anywhere. Third, cloud computing is reshaping the way of using computing resources. The classic pay/scale-as-you-go model allows hardware resources to be optimally allocated and well-managed. These three trends lend credence to a new mobile computing model with the combination of resource-rich cloud and less powerful mobile devices. In this model, mobile devices run the core virtualization hypervisor with virtualized phone instances, allowing for pervasive access to more powerful, highly-available virtual phone clones in the cloud. The centralized cloud, powered by rich computing and memory recourses, hosts virtual phone clones and repeatedly synchronize the data changes with virtual phone instances running on mobile devices. Users can flexibly isolate different computing environments. In this dissertation, we explored the opportunity of leveraging cloud resources for mobile computing for the purpose of energy saving, performance augmentation as well as secure computing enviroment isolation. We proposed a framework that allows mo- bile users to seamlessly leverage cloud to augment the computing capability of mobile devices and also makes it simpler for application developers to run their smartphone applications in the cloud without tedious application partitioning. This framework was built with virtualization on both server side and mobile devices. It has three building blocks including agile virtual machine deployment, efficient virtual resource management, and seamless mobile augmentation. We presented the design, imple- mentation and evaluation of these three components and demonstrated the feasibility of the proposed mobile cloud model

Secure Data Management and Transmission Infrastructure for the Future Smart Grid

Power grid has played a crucial role since its inception in the Industrial Age. It has evolved from a wide network supplying energy for incorporated multiple areas to the largest cyber-physical system. Its security and reliability are crucial to any country’s economy and stability [1]. With the emergence of the new technologies and the growing pressure of the global warming, the aging power grid can no longer meet the requirements of the modern industry, which leads to the proposal of ‘smart grid’. In smart grid, both electricity and control information communicate in a massively distributed power network. It is essential for smart grid to deliver real-time data by communication network. By using smart meter, AMI can measure energy consumption, monitor loads, collect data and forward information to collectors. Smart grid is an intelligent network consists of many technologies in not only power but also information, telecommunications and control. The most famous structure of smart grid is the three-layer structure. It divides smart grid into three different layers, each layer has its own duty. All these three layers work together, providing us a smart grid that monitor and optimize the operations of all functional units from power generation to all the end-customers [2]. To enhance the security level of future smart grid, deploying a high secure level data transmission scheme on critical nodes is an effective and practical approach. A critical node is a communication node in a cyber-physical network which can be developed to meet certain requirements. It also has firewalls and capability of intrusion detection, so it is useful for a time-critical network system, in other words, it is suitable for future smart grid. The deployment of such a scheme can be tricky regarding to different network topologies. A simple and general way is to install it on every node in the network, that is to say all nodes in this network are critical nodes, but this way takes time, energy and money. Obviously, it is not the best way to do so. Thus, we propose a multi-objective evolutionary algorithm for the searching of critical nodes. A new scheme should be proposed for smart grid. Also, an optimal planning in power grid for embedding large system can effectively ensure every power station and substation to operate safely and detect anomalies in time. Using such a new method is a reliable method to meet increasing security challenges. The evolutionary frame helps in getting optimum without calculating the gradient of the objective function. In the meanwhile, a means of decomposition is useful for exploring solutions evenly in decision space. Furthermore, constraints handling technologies can place critical nodes on optimal locations so as to enhance system security even with several constraints of limited resources and/or hardware. The high-quality experimental results have validated the efficiency and applicability of the proposed approach. It has good reason to believe that the new algorithm has a promising space over the real-world multi-objective optimization problems extracted from power grid security domain. In this thesis, a cloud-based information infrastructure is proposed to deal with the big data storage and computation problems for the future smart grid, some challenges and limitations are addressed, and a new secure data management and transmission strategy regarding increasing security challenges of future smart grid are given as well

Secure Data Management and Transmission Infrastructure for the Future Smart Grid

Power grid has played a crucial role since its inception in the Industrial Age. It has evolved from a wide network supplying energy for incorporated multiple areas to the largest cyber-physical system. Its security and reliability are crucial to any country’s economy and stability [1]. With the emergence of the new technologies and the growing pressure of the global warming, the aging power grid can no longer meet the requirements of the modern industry, which leads to the proposal of ‘smart grid’. In smart grid, both electricity and control information communicate in a massively distributed power network. It is essential for smart grid to deliver real-time data by communication network. By using smart meter, AMI can measure energy consumption, monitor loads, collect data and forward information to collectors. Smart grid is an intelligent network consists of many technologies in not only power but also information, telecommunications and control. The most famous structure of smart grid is the three-layer structure. It divides smart grid into three different layers, each layer has its own duty. All these three layers work together, providing us a smart grid that monitor and optimize the operations of all functional units from power generation to all the end-customers [2]. To enhance the security level of future smart grid, deploying a high secure level data transmission scheme on critical nodes is an effective and practical approach. A critical node is a communication node in a cyber-physical network which can be developed to meet certain requirements. It also has firewalls and capability of intrusion detection, so it is useful for a time-critical network system, in other words, it is suitable for future smart grid. The deployment of such a scheme can be tricky regarding to different network topologies. A simple and general way is to install it on every node in the network, that is to say all nodes in this network are critical nodes, but this way takes time, energy and money. Obviously, it is not the best way to do so. Thus, we propose a multi-objective evolutionary algorithm for the searching of critical nodes. A new scheme should be proposed for smart grid. Also, an optimal planning in power grid for embedding large system can effectively ensure every power station and substation to operate safely and detect anomalies in time. Using such a new method is a reliable method to meet increasing security challenges. The evolutionary frame helps in getting optimum without calculating the gradient of the objective function. In the meanwhile, a means of decomposition is useful for exploring solutions evenly in decision space. Furthermore, constraints handling technologies can place critical nodes on optimal locations so as to enhance system security even with several constraints of limited resources and/or hardware. The high-quality experimental results have validated the efficiency and applicability of the proposed approach. It has good reason to believe that the new algorithm has a promising space over the real-world multi-objective optimization problems extracted from power grid security domain. In this thesis, a cloud-based information infrastructure is proposed to deal with the big data storage and computation problems for the future smart grid, some challenges and limitations are addressed, and a new secure data management and transmission strategy regarding increasing security challenges of future smart grid are given as well