267,256 research outputs found
Quantitative Perspectives on Fifty Years of the Journal of the History of Biology
Journal of the History of Biology provides a fifty-year long record for
examining the evolution of the history of biology as a scholarly discipline. In
this paper, we present a new dataset and preliminary quantitative analysis of
the thematic content of JHB from the perspectives of geography, organisms, and
thematic fields. The geographic diversity of authors whose work appears in JHB
has increased steadily since 1968, but the geographic coverage of the content
of JHB articles remains strongly lopsided toward the United States, United
Kingdom, and western Europe and has diversified much less dramatically over
time. The taxonomic diversity of organisms discussed in JHB increased steadily
between 1968 and the late 1990s but declined in later years, mirroring broader
patterns of diversification previously reported in the biomedical research
literature. Finally, we used a combination of topic modeling and nonlinear
dimensionality reduction techniques to develop a model of multi-article fields
within JHB. We found evidence for directional changes in the representation of
fields on multiple scales. The diversity of JHB with regard to the
representation of thematic fields has increased overall, with most of that
diversification occurring in recent years. Drawing on the dataset generated in
the course of this analysis, as well as web services in the emerging digital
history and philosophy of science ecosystem, we have developed an interactive
web platform for exploring the content of JHB, and we provide a brief overview
of the platform in this article. As a whole, the data and analyses presented
here provide a starting-place for further critical reflection on the evolution
of the history of biology over the past half-century.Comment: 45 pages, 14 figures, 4 table
Global-Scale Resource Survey and Performance Monitoring of Public OGC Web Map Services
One of the most widely-implemented service standards provided by the Open
Geospatial Consortium (OGC) to the user community is the Web Map Service (WMS).
WMS is widely employed globally, but there is limited knowledge of the global
distribution, adoption status or the service quality of these online WMS
resources. To fill this void, we investigated global WMSs resources and
performed distributed performance monitoring of these services. This paper
explicates a distributed monitoring framework that was used to monitor 46,296
WMSs continuously for over one year and a crawling method to discover these
WMSs. We analyzed server locations, provider types, themes, the spatiotemporal
coverage of map layers and the service versions for 41,703 valid WMSs.
Furthermore, we appraised the stability and performance of basic operations for
1210 selected WMSs (i.e., GetCapabilities and GetMap). We discuss the major
reasons for request errors and performance issues, as well as the relationship
between service response times and the spatiotemporal distribution of client
monitoring sites. This paper will help service providers, end users and
developers of standards to grasp the status of global WMS resources, as well as
to understand the adoption status of OGC standards. The conclusions drawn in
this paper can benefit geospatial resource discovery, service performance
evaluation and guide service performance improvements.Comment: 24 pages; 15 figure
Diversification of shrub frogs (Rhacophoridae, Pseudophilautus) in Sri Lanka - Timing and geographic context
US National Science Foundation (DEB 0345885) to CJS and JH; National Geographic Society (7612-04) to CJS; and Society of Systematic Biologists Graduate Student Award for Research to MM. MM was also supported by a Harvard University Center for the Environment (HUCE) Ziff Environmental Postdoctoral Fellowship. (DEB 0345885 - US National Science Foundation; 7612-04 - National Geographic Society; Society of Systematic Biologists Graduate Student Award for Research; Harvard University Center for the Environment (HUCE) Ziff Environmental Postdoctoral Fellowship)Accepted manuscrip
Principles and Concepts of Agent-Based Modelling for Developing Geospatial Simulations
The aim of this paper is to outline fundamental concepts and principles of the Agent-Based Modelling (ABM) paradigm, with particular reference to the development of geospatial simulations. The paper begins with a brief definition of modelling, followed by a classification of model types, and a comment regarding a shift (in certain circumstances) towards modelling systems at the individual-level. In particular, automata approaches (e.g. Cellular Automata, CA, and ABM) have been particularly popular, with ABM moving to the fore. A definition of agents and agent-based models is given; identifying their advantages and disadvantages, especially in relation to geospatial modelling. The potential use of agent-based models is discussed, and how-to instructions for developing an agent-based model are provided. Types of simulation / modelling systems available for ABM are defined, supplemented with criteria to consider before choosing a particular system for a modelling endeavour. Information pertaining to a selection of simulation / modelling systems (Swarm, MASON, Repast, StarLogo, NetLogo, OBEUS, AgentSheets and AnyLogic) is provided, categorised by their licensing policy (open source, shareware / freeware and proprietary systems). The evaluation (i.e. verification, calibration, validation and analysis) of agent-based models and their output is examined, and noteworthy applications are discussed.Geographical Information Systems (GIS) are a particularly useful medium for representing model input and output of a geospatial nature. However, GIS are not well suited to dynamic modelling (e.g. ABM). In particular, problems of representing time and change within GIS are highlighted. Consequently, this paper explores the opportunity of linking (through coupling or integration / embedding) a GIS with a simulation / modelling system purposely built, and therefore better suited to supporting the requirements of ABM. This paper concludes with a synthesis of the discussion that has proceeded. The aim of this paper is to outline fundamental concepts and principles of the Agent-Based Modelling (ABM) paradigm, with particular reference to the development of geospatial simulations. The paper begins with a brief definition of modelling, followed by a classification of model types, and a comment regarding a shift (in certain circumstances) towards modelling systems at the individual-level. In particular, automata approaches (e.g. Cellular Automata, CA, and ABM) have been particularly popular, with ABM moving to the fore. A definition of agents and agent-based models is given; identifying their advantages and disadvantages, especially in relation to geospatial modelling. The potential use of agent-based models is discussed, and how-to instructions for developing an agent-based model are provided. Types of simulation / modelling systems available for ABM are defined, supplemented with criteria to consider before choosing a particular system for a modelling endeavour. Information pertaining to a selection of simulation / modelling systems (Swarm, MASON, Repast, StarLogo, NetLogo, OBEUS, AgentSheets and AnyLogic) is provided, categorised by their licensing policy (open source, shareware / freeware and proprietary systems). The evaluation (i.e. verification, calibration, validation and analysis) of agent-based models and their output is examined, and noteworthy applications are discussed.Geographical Information Systems (GIS) are a particularly useful medium for representing model input and output of a geospatial nature. However, GIS are not well suited to dynamic modelling (e.g. ABM). In particular, problems of representing time and change within GIS are highlighted. Consequently, this paper explores the opportunity of linking (through coupling or integration / embedding) a GIS with a simulation / modelling system purposely built, and therefore better suited to supporting the requirements of ABM. This paper concludes with a synthesis of the discussion that has proceeded
MSUO Information Technology and Geographical Information Systems: Common Protocols & Procedures. Report to the Marine Safety Umbrella Operation
The Marine Safety Umbrella Operation (MSUO) facilitates the cooperation between Interreg
funded Marine Safety Projects and maritime stakeholders. The main aim of MSUO is to
permit efficient operation of new projects through Project Cooperation Initiatives, these
include the review of the common protocols and procedures for Information Technology (IT)
and Geographical Information Systems (GIS).
This study carried out by CSA Group and the National Centre for Geocomputation (NCG)
reviews current spatial information standards in Europe and the data management
methodologies associated with different marine safety projects.
International best practice was reviewed based on the combined experience of spatial data
research at NCG and initiatives in the US, Canada and the UK relating to marine security
service information and acquisition and integration of large marine datasets for ocean
management purposes.
This report identifies the most appropriate international data management practices that could
be adopted for future MSUO projects
Identifiying High Risk Areas of Zika Virus Infection by Meteorological Factors in Columbia
Background Several Zika virus (ZIKV) outbreaks have occurred since October 2015. Because there is no effective treatment for ZIKV infection, developing an effective surveillance and warning system is currently a high priority to prevent ZIKV infection. Despite Aedes mosquitos having been known to spread ZIKV, the calculation approach is diverse, and only applied to local areas. This study used meteorological measurements to monitor ZIKV infection due to the high correlation between climate change and Aedes mosquitos and the convenience to obtain meteorological data from weather monitoring stations. Methods This study applied the Bayesian structured additive regression modeling approach to include spatial interactive terms with meteorological factors and a geospatial function in a zero-inflated Poisson model. The study area contained 32 administrative departments in Colombia from October 2015 to December 2017. Weekly ZIKV infection cases and daily meteorological measurements were collected. Mapping techniques were adopted to visualize spatial findings. A series of model selections determined the best combinations of meteorological factors in the same model. Results When multiple meteorological factors are considered in the same model, both total rainfall and average temperature can best assess the geographic disparities of ZIKV infection. Meanwhile, a 1-in. increase in rainfall is associated with an increase in the logarithm of relative risk (logRR) of ZIKV infection of at most 1.66 (95% credible interval [CI] = 1.09, 2.15) as well as a 1 °F increase in average temperature is significantly associated with at most 0.79 (95% CI = 0.12, 1.22) increase in the logRR of ZIKV. Moreover, after controlling rainfall and average temperature, an independent geospatial function in the model results in two departments with an excessive ZIKV risk which may be explained by unobserved factors other than total rainfall and average temperature. Conclusion Our study found that meteorological factors are significantly associated with ZIKV infection across departments. The study determined both total rainfall and average temperature as the best meteorological factors to identify high risk departments of ZIKV infection. These findings can help governmental agencies monitor at risk areas according to meteorological measurements, and develop preventions in those at risk areas in priority
What's Cooking in Your Food System? A Guide to Community Food Assessment
Learn about Community Food Assessments, a creative way to highlight food-related resources and needs, promote collaboration and community participation, and create lasting change. This Guide includes case studies of nine Community Food Assessments; tips for planning and organizing an assessment; guidance on research methods and strategies for promoting community participation; and ideas for translating an assessment into action for change
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