MSMT-CNN for Solar Active Region Detection with Multi-Spectral Analysis

Precisely detecting solar active regions (AR) from multi-spectral images is a challenging task yet important in understanding solar activity and its influence on space weather. A main challenge comes from each modality capturing a different location of these 3D objects, as opposed to more traditional multi-spectral imaging scenarios where all image bands observe the same scene. We present a multi-task deep learning framework that exploits the dependencies between image bands to produce 3D AR detection where different image bands (and physical locations) each have their own set of results. Different feature fusion strategies are investigated in this work, where information from different image modalities is aggregated at different semantic levels throughout the network. This allows the network to benefit from the joint analysis while preserving the band-specific information. We compare our detection method against baseline approaches for solar image analysis (multi-channel coronal hole detection, SPOCA for ARs (Verbeeck et al. Astron Astrophys 561:16, 2013)) and a state-of-the-art deep learning method (Faster RCNN) and show enhanced performances in detecting ARs jointly from multiple bands. We also evaluate our proposed approach on synthetic data of similar spatial configurations obtained from annotated multi-modal magnetic resonance images

Automated classification of heat sources detected using SWIR remote sensing

Abstract The potential of shortwave infrared (SWIR) remote sensing to detect hotspots has been investigated using satellite data for decades. The hotspots detected by satellite SWIR sensors include very high-temperature heat sources such as wildfires, volcanoes, industrial activity, or open burning. This study proposes an automated classification method of heat source detected utilizing Landsat 8 and Sentinel-2 data. We created training data of heat sources via visual inspection of hotspots detected by Landsat 8. A scheme to classify heat sources for daytime data was developed by combining classification methods based on a Convolutional Neural Network (CNN) algorithm utilizing spatial features and a decision tree algorithm based on thematic land-cover information and our time series detection record. Validation work using 10,959 classification results corresponding to hotspots acquired from May 2017 to July 2019 indicated that the two classification results were in 79.7% agreement. For hotspots where the two classification schemes agreed, the classification was 97.9% accurate. Even when the results of the two classification schemes conflicted, either was correct in 73% of the samples. To improve the accuracy, the heat source category was re-allocated to the most probable category corresponding to the combination of the results from the two methods. Integrating the two approaches achieved an overall accuracy of 92.8%. In contrast, the overall accuracy for heat source classification during nighttime reached 79.3% because only the decision tree-based classification was applicable to limited available data. Comparison with the Visible Infrared Imaging Radiometer Suite (VIIRS) fire product revealed that, despite the limited data acquisition frequency of Landsat 8, regional tendencies in hotspot occurrence were qualitatively appropriate for an annual period on a global scale

Localisation in 3D Images Using Cross-features Correlation Learning

Object detection and segmentation have evolved drastically over the past two decades thanks to the continuous advancement in the field of deep learning. Substantial research efforts have been dedicated towards integrating object detection techniques into a wide range of real-world prob-lems. Most existing methods take advantage of the successful application and representational ability of convolutional neural networks (CNNs). Generally, these methods target mainstream applications that are typically based on 2D imaging scenarios. Additionally, driven by the strong correlation between the quality of the feature embedding and the performance in CNNs, most works focus on design characteristics of CNNs, e.g., depth and width, to enhance their modelling capacity and discriminative ability. Limited research was directed towards exploiting feature-level dependencies, which can be feasibly used to enhance the performance of CNNs. More-over, directly adopting such approaches into more complex imaging domains that target data of higher dimensions (e.g., 3D multi-modal and volumetric images) is not straightforwardly appli-cable due to the different nature and complexity of the problem. In this thesis, we explore the possibility of incorporating feature-level correspondence and correlations into object detection and segmentation contexts that target the localisation of 3D objects from 3D multi-modal and volumetric image data. Accordingly, we first explore the detection problem of 3D solar active regions in multi-spectral solar imagery where different imaging bands correspond to different 2D layers (altitudes) in the 3D solar atmosphere.We propose a joint analysis approach in which information from different imaging bands is first individually analysed using band-specific network branches to extract inter-band features that are then dynamically cross-integrated and jointly analysed to investigate spatial correspon-dence and co-dependencies between the different bands. The aggregated embeddings are further analysed using band-specific detection network branches to predict separate sets of results (one for each band). Throughout our study, we evaluate different types of feature fusion, using convo-lutional embeddings of different semantic levels, as well as the impact of using different numbers of image bands inputs to perform the joint analysis. We test the proposed approach over different multi-modal datasets (multi-modal solar images and brain MRI) and applications. The proposed joint analysis based framework consistently improves the CNN’s performance when detecting target regions in contrast to single band based baseline methods.We then generalise our cross-band joint analysis detection scheme into the 3D segmentation problem using multi-modal images. We adopt the joint analysis principles into a segmentation framework where cross-band information is dynamically analysed and cross-integrated at vari-ous semantic levels. The proposed segmentation network also takes advantage of band-specific skip connections to maximise the inter-band information and assist the network in capturing fine details using embeddings of different spatial scales. Furthermore, a recursive training strat-egy, based on weak labels (e.g., bounding boxes), is proposed to overcome the difficulty of producing dense labels to train the segmentation network. We evaluate the proposed segmen-tation approach using different feature fusion approaches, over different datasets (multi-modal solar images, brain MRI, and cloud satellite imagery), and using different levels of supervisions. Promising results were achieved and demonstrate an improved performance in contrast to single band based analysis and state-of-the-art segmentation methods.Additionally, we investigate the possibility of explicitly modelling objective driven feature-level correlations, in a localised manner, within 3D medical imaging scenarios (3D CT pul-monary imaging) to enhance the effectiveness of the feature extraction process in CNNs and subsequently the detection performance. Particularly, we present a framework to perform the 3D detection of pulmonary nodules as an ensemble of two stages, candidate proposal and a false positive reduction. We propose a 3D channel attention block in which cross-channel informa-tion is incorporated to infer channel-wise feature importance with respect to the target objective. Unlike common attention approaches that rely on heavy dimensionality reduction and computa-tionally expensive multi-layer perceptron networks, the proposed approach utilises fully convo-lutional networks to allow directly exploiting rich 3D descriptors and performing the attention in an efficient manner. We also propose a fully convolutional 3D spatial attention approach that elevates cross-sectional information to infer spatial attention. We demonstrate the effectiveness of the proposed attention approaches against a number of popular channel and spatial attention mechanisms. Furthermore, for the False positive reduction stage, in addition to attention, we adopt a joint analysis based approach that takes into account the variable nodule morphology by aggregating spatial information from different contextual levels. We also propose a Zoom-in convolutional path that incorporates semantic information of different spatial scales to assist the network in capturing fine details. The proposed detection approach demonstrates considerable gains in performance in contrast to state-of-the-art lung nodule detection methods.We further explore the possibility of incorporating long-range dependencies between arbi-trary positions in the input features using Transformer networks to infer self-attention, in the context of 3D pulmonary nodule detection, in contrast to localised (convolutional based) atten-tion . We present a hybrid 3D detection approach that takes advantage of both, the Transformers ability in modelling global context and correlations and the spatial representational characteris-tics of convolutional neural networks, providing complementary information and subsequently improving the discriminative ability of the detection model. We propose two hybrid Transformer CNN variants where we investigate the impact of exploiting a deeper Transformer design –in which more Transformer layers and trainable parameters are incorporated– is used along with high-level convolutional feature inputs of a single spatial resolution, in contrast to a shallower Transformer design –of less Transformer layers and trainable parameters– while exploiting con-volutional embeddings of different semantic levels and relatively higher resolution.Extensive quantitative and qualitative analyses are presented for the proposed methods in this thesis and demonstrate the feasibility of exploiting feature-level relations, either implicitly or explicitly, in different detection and segmentation problems