Empirical Study of Training-Set Creation for Software Architecture Traceability Methods

Machine-learning algorithms have the potential to support trace retrieval methods making significant reductions in costs and human-involvement required for the creation and maintenance of traceability links between system requirements, system architecture, and the source code. These algorithms can be trained how to detect the relevant architecture and can then be sent to find it on its own. However, the long-term reductions in cost and effort face a significant upfront cost in the initial training of the algorithm. This cost comes in the form of needing to create training sets of code, which train the algorithm how to identify traceability links. These supervised or semi-supervised training methods require the involvement of highly trained, and thus expensive, experts to collect, and format, these data-sets. In this thesis, three baseline methods training datasets creation are presented. These methods are (i) Manual Expert-based, which involves a human-compiled dataset, (ii) Automated Web-Mining, which creates training datasets by collecting and data-mining APIs (specifically from technical-programming websites), and (iii) Automated Big-Data Analysis, which data-mines ultra-large code repositories to generate the training datasets. The trace-link creation accuracy achieved using each of these three methods is compared, and the cost/benefit comparisons between them is discussed. Furthermore, in a related area, potential correlations between training set size and the accuracy of recovering trace links is investigated. The results of this area of study indicate that the automated techniques, capable of creating very large training sets, allow for sufficient reliability in the problem of tracing architectural tactics. This indicates that these automated methods have potential applications in other areas of software traceability

Grand Challenges of Traceability: The Next Ten Years

In 2007, the software and systems traceability community met at the first Natural Bridge symposium on the Grand Challenges of Traceability to establish and address research goals for achieving effective, trustworthy, and ubiquitous traceability. Ten years later, in 2017, the community came together to evaluate a decade of progress towards achieving these goals. These proceedings document some of that progress. They include a series of short position papers, representing current work in the community organized across four process axes of traceability practice. The sessions covered topics from Trace Strategizing, Trace Link Creation and Evolution, Trace Link Usage, real-world applications of Traceability, and Traceability Datasets and benchmarks. Two breakout groups focused on the importance of creating and sharing traceability datasets within the research community, and discussed challenges related to the adoption of tracing techniques in industrial practice. Members of the research community are engaged in many active, ongoing, and impactful research projects. Our hope is that ten years from now we will be able to look back at a productive decade of research and claim that we have achieved the overarching Grand Challenge of Traceability, which seeks for traceability to be always present, built into the engineering process, and for it to have "effectively disappeared without a trace". We hope that others will see the potential that traceability has for empowering software and systems engineers to develop higher-quality products at increasing levels of complexity and scale, and that they will join the active community of Software and Systems traceability researchers as we move forward into the next decade of research

Mapping the spatiotemporal dynamics of calcium signaling in cellular neural networks using optical flow

An optical flow gradient algorithm was applied to spontaneously forming net- works of neurons and glia in culture imaged by fluorescence optical microscopy in order to map functional calcium signaling with single pixel resolution. Optical flow estimates the direction and speed of motion of objects in an image between subsequent frames in a recorded digital sequence of images (i.e. a movie). Computed vector field outputs by the algorithm were able to track the spatiotemporal dynamics of calcium signaling pat- terns. We begin by briefly reviewing the mathematics of the optical flow algorithm, and then describe how to solve for the displacement vectors and how to measure their reliability. We then compare computed flow vectors with manually estimated vectors for the progression of a calcium signal recorded from representative astrocyte cultures. Finally, we applied the algorithm to preparations of primary astrocytes and hippocampal neurons and to the rMC-1 Muller glial cell line in order to illustrate the capability of the algorithm for capturing different types of spatiotemporal calcium activity. We discuss the imaging requirements, parameter selection and threshold selection for reliable measurements, and offer perspectives on uses of the vector data.Comment: 23 pages, 5 figures. Peer reviewed accepted version in press in Annals of Biomedical Engineerin

Grand Challenges of Traceability: The Next Ten Years

In 2007, the software and systems traceability community met at the first Natural Bridge symposium on the Grand Challenges of Traceability to establish and address research goals for achieving effective, trustworthy, and ubiquitous traceability. Ten years later, in 2017, the community came together to evaluate a decade of progress towards achieving these goals. These proceedings document some of that progress. They include a series of short position papers, representing current work in the community organized across four process axes of traceability practice. The sessions covered topics from Trace Strategizing, Trace Link Creation and Evolution, Trace Link Usage, real-world applications of Traceability, and Traceability Datasets and benchmarks. Two breakout groups focused on the importance of creating and sharing traceability datasets within the research community, and discussed challenges related to the adoption of tracing techniques in industrial practice. Members of the research community are engaged in many active, ongoing, and impactful research projects. Our hope is that ten years from now we will be able to look back at a productive decade of research and claim that we have achieved the overarching Grand Challenge of Traceability, which seeks for traceability to be always present, built into the engineering process, and for it to have "effectively disappeared without a trace". We hope that others will see the potential that traceability has for empowering software and systems engineers to develop higher-quality products at increasing levels of complexity and scale, and that they will join the active community of Software and Systems traceability researchers as we move forward into the next decade of research

Towards an Intelligent System for Software Traceability Datasets Generation

Software datasets and artifacts play a crucial role in advancing automated software traceability research. They can be used by researchers in different ways to develop or validate new automated approaches. Software artifacts, other than source code and issue tracking entities, can also provide a great deal of insight into a software system and facilitate knowledge sharing and information reuse. The diversity and quality of the datasets and artifacts within a research community have a significant impact on the accuracy, generalizability, and reproducibility of the results and consequently on the usefulness and practicality of the techniques under study. Collecting and assessing the quality of such datasets are not trivial tasks and have been reported as an obstacle by many researchers in the domain of software engineering. In this dissertation, we report our empirical work that aims to automatically generate and assess the quality of such datasets. Our goal is to introduce an intelligent system that can help researchers in the domain of software traceability in obtaining high-quality “training sets”, “testing sets” or appropriate “case studies” from open source repositories based on their needs. In the first project, we present a first-of-its-kind study to review and assess the datasets that have been used in software traceability research over the last fifteen years. It presents and articulates the current status of these datasets, their characteristics, and their threats to validity. Second, this dissertation introduces a Traceability-Dataset Quality Assessment (T-DQA) framework to categorize software traceability datasets and assist researchers to select appropriate datasets for their research based on different characteristics of the datasets and the context in which those datasets will be used. Third, we present the results of an empirical study with limited scope to generate datasets using three baseline approaches for the creation of training data. These approaches are (i) Expert-Based, (ii) Automated Web-Mining, which generates training sets by automatically mining tactic\u27s APIs from technical programming websites, and lastly, (iii) Automated Big-Data Analysis, which mines ultra-large-scale code repositories to generate training sets. We compare the trace-link creation accuracy achieved using each of these three baseline approaches and discuss the costs and benefits associated with them. Additionally, in a separate study, we investigate the impact of training set size on the accuracy of recovering trace links. Finally, we conduct a large-scale study to identify which types of software artifacts are produced by a wide variety of open-source projects at different levels of granularity. Then we propose an automated approach based on Machine Learning techniques to identify various types of software artifacts. Through a set of experiments, we report and compare the performance of these algorithms when applied to software artifacts. Finally, we conducted a study to understand how software traceability experts and practitioners evaluate the quality of their datasets. In addition, we aim at gathering experts’ opinions on all quality attributes and metrics proposed by T-DQA

Automatic detection of constraints in software documentation

2021 Fall.Includes bibliographical references.Software documentation is an important resource when maintaining and evolving software, as it supports developers in program understanding. To keep it up to date, developers need to verify that all the constraints affected by a change in source code are consistently described in the documentation. The process of detecting all the constraints in the documentation and cross-checking the constraints in the source code is time-consuming. An approach capable of automatically identifying software constraints in documentation could facilitate the process of detecting constraints, which are necessary to cross-check documentation and source code. In this thesis, we explore different machine learning algorithms to build binary classification models that assign sentences extracted from software documentation to one of two categories: constraints and non-constraints. The models are trained on a data set that consists of 368 manually tagged sentences from four open-source software systems. We evaluate the performance of the different models (Decision tree, Naive Bayes, Support Vector Machine, Fine-tuned BERT) based on precision, recall and F1-score. Our best model (i.e., a decision tree featuring bigrams) was able to achieve 74.0% precision, 83.8% recall and an F1-score of 0.79. This suggests that our results are promising and that it is possible to build machine learning based models for the automatic detection of constraints in the software documentation

Annotating Privacy Policies in the Sharing Economy

Applications (apps) of the Digital Sharing Economy (DSE), such as Uber, Airbnb, and TaskRabbit, have become a main enabler of economic growth and shared prosperity in modern-day societies. However, the complex exchange of goods, services, and data that takes place over these apps frequently puts their end-users' privacy at risk. Privacy policies of DSE apps are provided to disclose how private user data is being collected and handled. However, in reality, such policies are verbose and difficult to understand, leaving DSE users vulnerable to privacy intrusive practices. To address these concerns, in this paper, we propose an automated approach for annotating privacy policies in the DSE market. Our approach identifies data collection claims in these policies and maps them to the quality features of their apps. Visual and textual annotations are then used to further explain and justify these claims. The proposed approach is evaluated with 18 DSE app users. The results show that annotating privacy policies can significantly enhance their comprehensibility to the average DSE user. Our findings are intended to help DSE app developers to draft more comprehensible privacy policies as well as help their end-users to make more informed decisions in one of the fastest growing software ecosystems in the world