574 research outputs found
A Survey on Deep Learning in Medical Image Analysis
Deep learning algorithms, in particular convolutional networks, have rapidly
become a methodology of choice for analyzing medical images. This paper reviews
the major deep learning concepts pertinent to medical image analysis and
summarizes over 300 contributions to the field, most of which appeared in the
last year. We survey the use of deep learning for image classification, object
detection, segmentation, registration, and other tasks and provide concise
overviews of studies per application area. Open challenges and directions for
future research are discussed.Comment: Revised survey includes expanded discussion section and reworked
introductory section on common deep architectures. Added missed papers from
before Feb 1st 201
Deep Learning in Cardiology
The medical field is creating large amount of data that physicians are unable
to decipher and use efficiently. Moreover, rule-based expert systems are
inefficient in solving complicated medical tasks or for creating insights using
big data. Deep learning has emerged as a more accurate and effective technology
in a wide range of medical problems such as diagnosis, prediction and
intervention. Deep learning is a representation learning method that consists
of layers that transform the data non-linearly, thus, revealing hierarchical
relationships and structures. In this review we survey deep learning
application papers that use structured data, signal and imaging modalities from
cardiology. We discuss the advantages and limitations of applying deep learning
in cardiology that also apply in medicine in general, while proposing certain
directions as the most viable for clinical use.Comment: 27 pages, 2 figures, 10 table
Unsupervised learning for concept detection in medical images: a comparative analysis
As digital medical imaging becomes more prevalent and archives increase in
size, representation learning exposes an interesting opportunity for enhanced
medical decision support systems. On the other hand, medical imaging data is
often scarce and short on annotations. In this paper, we present an assessment
of unsupervised feature learning approaches for images in the biomedical
literature, which can be applied to automatic biomedical concept detection. Six
unsupervised representation learning methods were built, including traditional
bags of visual words, autoencoders, and generative adversarial networks. Each
model was trained, and their respective feature space evaluated using images
from the ImageCLEF 2017 concept detection task. We conclude that it is possible
to obtain more powerful representations with modern deep learning approaches,
in contrast with previously popular computer vision methods. Although
generative adversarial networks can provide good results, they are harder to
succeed in highly varied data sets. The possibility of semi-supervised
learning, as well as their use in medical information retrieval problems, are
the next steps to be strongly considered
Ranking Significant Discrepancies in Clinical Reports
Medical errors are a major public health concern and a leading cause of death
worldwide. Many healthcare centers and hospitals use reporting systems where
medical practitioners write a preliminary medical report and the report is
later reviewed, revised, and finalized by a more experienced physician. The
revisions range from stylistic to corrections of critical errors or
misinterpretations of the case. Due to the large quantity of reports written
daily, it is often difficult to manually and thoroughly review all the
finalized reports to find such errors and learn from them. To address this
challenge, we propose a novel ranking approach, consisting of textual and
ontological overlaps between the preliminary and final versions of reports. The
approach learns to rank the reports based on the degree of discrepancy between
the versions. This allows medical practitioners to easily identify and learn
from the reports in which their interpretation most substantially differed from
that of the attending physician (who finalized the report). This is a crucial
step towards uncovering potential errors and helping medical practitioners to
learn from such errors, thus improving patient-care in the long run. We
evaluate our model on a dataset of radiology reports and show that our approach
outperforms both previously-proposed approaches and more recent language models
by 4.5% to 15.4%.Comment: ECIR 2020 (short
Recuperação de informação multimodal em repositórios de imagem médica
The proliferation of digital medical imaging modalities in hospitals and other
diagnostic facilities has created huge repositories of valuable data, often
not fully explored. Moreover, the past few years show a growing trend
of data production. As such, studying new ways to index, process and
retrieve medical images becomes an important subject to be addressed by
the wider community of radiologists, scientists and engineers. Content-based
image retrieval, which encompasses various methods, can exploit the visual
information of a medical imaging archive, and is known to be beneficial to
practitioners and researchers. However, the integration of the latest systems
for medical image retrieval into clinical workflows is still rare, and their
effectiveness still show room for improvement.
This thesis proposes solutions and methods for multimodal information
retrieval, in the context of medical imaging repositories. The major
contributions are a search engine for medical imaging studies supporting
multimodal queries in an extensible archive; a framework for automated
labeling of medical images for content discovery; and an assessment and
proposal of feature learning techniques for concept detection from medical
images, exhibiting greater potential than feature extraction algorithms that
were pertinently used in similar tasks. These contributions, each in their
own dimension, seek to narrow the scientific and technical gap towards
the development and adoption of novel multimodal medical image retrieval
systems, to ultimately become part of the workflows of medical practitioners,
teachers, and researchers in healthcare.A proliferação de modalidades de imagem médica digital, em hospitais,
clínicas e outros centros de diagnóstico, levou à criação de enormes
repositórios de dados, frequentemente não explorados na sua totalidade.
Além disso, os últimos anos revelam, claramente, uma tendência para o
crescimento da produção de dados. Portanto, torna-se importante estudar
novas maneiras de indexar, processar e recuperar imagens médicas, por
parte da comunidade alargada de radiologistas, cientistas e engenheiros. A
recuperação de imagens baseada em conteúdo, que envolve uma grande
variedade de métodos, permite a exploração da informação visual num
arquivo de imagem médica, o que traz benefícios para os médicos e
investigadores. Contudo, a integração destas soluções nos fluxos de trabalho
é ainda rara e a eficácia dos mais recentes sistemas de recuperação de
imagem médica pode ser melhorada.
A presente tese propõe soluções e métodos para recuperação de informação
multimodal, no contexto de repositórios de imagem médica. As contribuições
principais são as seguintes: um motor de pesquisa para estudos de imagem
médica com suporte a pesquisas multimodais num arquivo extensível; uma
estrutura para a anotação automática de imagens; e uma avaliação e
proposta de técnicas de representation learning para deteção automática de
conceitos em imagens médicas, exibindo maior potencial do que as técnicas
de extração de features visuais outrora pertinentes em tarefas semelhantes.
Estas contribuições procuram reduzir as dificuldades técnicas e científicas
para o desenvolvimento e adoção de sistemas modernos de recuperação de
imagem médica multimodal, de modo a que estes façam finalmente parte
das ferramentas típicas dos profissionais, professores e investigadores da área
da saúde.Programa Doutoral em Informátic
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