Nonrigid Registration of Brain Tumor Resection MR Images Based on Joint Saliency Map and Keypoint Clustering

This paper proposes a novel global-to-local nonrigid brain MR image registration to compensate for the brain shift and the unmatchable outliers caused by the tumor resection. The mutual information between the corresponding salient structures, which are enhanced by the joint saliency map (JSM), is maximized to achieve a global rigid registration of the two images. Being detected and clustered at the paired contiguous matching areas in the globally registered images, the paired pools of DoG keypoints in combination with the JSM provide a useful cluster-to-cluster correspondence to guide the local control-point correspondence detection and the outlier keypoint rejection. Lastly, a quasi-inverse consistent deformation is smoothly approximated to locally register brain images through the mapping the clustered control points by compact support radial basis functions. The 2D implementation of the method can model the brain shift in brain tumor resection MR images, though the theory holds for the 3D case

Examination of myocardial electrophysiology using novel panoramic optical mapping techniques

Optical mapping of voltage signals has revolutionised the field and study of cardiac electrophysiology by providing the means to visualise changes in electrical activity at a high temporal and spatial resolution from the cellular to the whole heart level under both normal and disease conditions. The aim of this thesis was to develop a novel method of panoramic optical mapping using a single camera and to study myocardial electrophysiology in isolated Langendorff-perfused rabbit hearts. First, proper procedures for selection, filtering and analysis of the optical data recorded from the panoramic optical mapping system were established. This work was followed by extensive characterisation of the electrical activity across the epicardial surface of the preparation investigating time and heart dependent effects. In an initial study, features of epicardial electrophysiology were examined as the temperature of the heart was reduced below physiological values. This manoeuvre was chosen to mimic the temperatures experienced during various levels of hypothermia in vivo, a condition known to promote arrhythmias. The facility for panoramic optical mapping allowed the extent of changes in conduction timing and pattern of ventricular activation and repolarisation to be assessed. In the main experimental section, changes in epicardial electrical activity were assessed under various pacing conditions in both normal hearts and in a rabbit model of chronic MI. In these experiments, there was significant changes in the pattern of electrical activation corresponding with the changes in pacing regime. These experiments demonstrated a negative correlation between activation time and APD, which was not maintained during ventricular pacing. This suggests that activation pattern is not the sole determinant of action potential duration in intact hearts. Lastly, a realistic 3D computational model of the rabbit left ventricle was developed to simulate the passive and active mechanical properties of the heart. The aim of this model was to infer further information from the experimental optical mapping studies. In future, it would be feasible to gain insight into the electrical and mechanical performance of the heart by simulating experimental pacing conditions in the model

Automated Analysis of 3D Stress Echocardiography

__Abstract__ The human circulatory system consists of the heart, blood, arteries, veins and capillaries. The heart is the muscular organ which pumps the blood through the human body (Fig. 1.1,1.2). Deoxygenated blood flows through the right atrium into the right ventricle, which pumps the blood into the pulmonary arteries. The blood is carried to the lungs, where it passes through a capillary network that enables the release of carbon dioxide and the uptake of oxygen. Oxygenated blood then returns to the heart via the pulmonary veins and flows from the left atrium into the left ventricle. The left ventricle then pumps the blood through the aorta, the major artery which supplies blood to the rest of the body [Drake et a!., 2005; Guyton and Halt 1996]. Therefore, it is vital that the cardiovascular system remains healthy. Disease of the cardiovascular system, if untreated, ultimately leads to the failure of other organs and death

Deformable Registration Using Scale Space Keypoints

In this paper, we describe a new methodology for keypoint-based affine and deformable medical image registration. This fast and computationally efficient method is automatic and does not rely on segmentation of images. The keypoint pixels used in this technique are extreme points in the scale space and are characterized by descriptor vectors which summarize the intensity gradient profile of the surrounding pixels. For each of the keypoints in the scene image ∗ , a corresponding keypoint is identified in the model image using the feature space nearest neighbor criteria. For deformable registration, B-splines are used to extrapolate a regular deformation grid for all of the pixels in the scene image based on the relative displacement vectors of the corresponding pairs. This approach results in a fast and accurate registration in the brain MRI images (an average target registration error of less than 2mm was acquired). We have also studied the affine registration problem in the liver ultrasound and brain MRI images and have acquired acceptable registrations using a mean square solution for affine parameters based on only around 30 corresponding keypoint pairs