Farm Detection based on Deep Convolutional Neural Nets and Semi-supervised Green Texture Detection using VIS-NIR Satellite Image

Farm detection using low resolution satellite images is an important topic in digital agriculture. However, it has not received enough attention compared to high-resolution images. Although high resolution images are more efficient for detection of land cover components, the analysis of low-resolution images are yet important due to the low-resolution repositories of the past satellite images used for timeseries analysis, free availability and economic concerns. The current paper addresses the problem of farm detection using low resolution satellite images. In digital agriculture, farm detection has significant role for key applications such as crop yield monitoring. Two main categories of object detection strategies are studied and compared in this paper; First, a two-step semi-supervised methodology is developed using traditional manual feature extraction and modelling techniques; the developed methodology uses the Normalized Difference Moisture Index (NDMI), Grey Level Co-occurrence Matrix (GLCM), 2-D Discrete Cosine Transform (DCT) and morphological features and Support Vector Machine (SVM) for classifier modelling. In the second strategy, high-level features learnt from the massive filter banks of deep Convolutional Neural Networks (CNNs) are utilised. Transfer learning strategies are employed for pretrained Visual Geometry Group Network (VGG-16) networks. Results show the superiority of the high-level features for classification of farm regions.publishedVersionPeer reviewe

Farm Area Segmentation in Satellite Images Using DeepLabv3+ Neural Networks

Farm detection using low resolution satellite images is an important part of digital agriculture applications such as crop yield monitoring. However, it has not received enough attention compared to high-resolution images. Although high resolution images are more efficient for detection of land cover components, the analysis of low-resolution images are yet important due to the low-resolution repositories of the past satellite images used for timeseries analysis, free availability and economic concerns. In this paper, semantic segmentation of farm areas is addressed using low resolution satellite images. The segmentation is performed in two stages; First, local patches or Regions of Interest (ROI) that include farm areas are detected. Next, deep semantic segmentation strategies are employed to detect the farm pixels. For patch classification, two previously developed local patch classification strategies are employed; a two-step semi-supervised methodology using hand-crafted features and Support Vector Machine (SVM) modelling and transfer learning using the pretrained Convolutional Neural Networks (CNNs). For the latter, the high-level features learnt from the massive filter banks of deep Visual Geometry Group Network (VGG-16) are utilized. After classifying the image patches that contain farm areas, the DeepLabv3+ model is used for semantic segmentation of farm pixels. Four different pretrained networks, resnet18, resnet50, resnet101 and mobilenetv2, are used to transfer their learnt features for the new farm segmentation problem. The first step results show the superiority of the transfer learning compared to hand-crafted features for classification of patches. The second step results show that the model trained based on resnet50 achieved the highest semantic segmentation accuracy.acceptedVersionPeer reviewe

Single-photon detection techniques for underwater imaging

This Thesis investigates the potential of a single-photon depth profiling system for imaging in highly scattering underwater environments. This scanning system measured depth using the time-of-flight and the time-correlated single-photon counting (TCSPC) technique. The system comprised a pulsed laser source, a monostatic scanning transceiver, with a silicon single-photon avalanche diode (SPAD) used for detection of the returned optical signal. Spectral transmittance measurements were performed on a number of different water samples in order to characterize the water types used in the experiments. This identified an optimum operational wavelength for each environment selected, which was in the wavelength region of 525 - 690 nm. Then, depth profiles measurements were performed in different scattering conditions, demonstrating high-resolution image re-construction for targets placed at stand-off distances up to nine attenuation lengths, using average optical power in the sub-milliwatt range. Depth and spatial resolution were investigated in several environments, demonstrating a depth resolution in the range of 500 μm to a few millimetres depending on the attenuation level of the medium. The angular resolution of the system was approximately 60 μrad in water with different levels of attenuation, illustrating that the narrow field of view helped preserve spatial resolution in the presence of high levels of forward scattering. Bespoke algorithms were developed for image reconstruction in order to recover depth, intensity and reflectivity information, and to investigate shorter acquisition times, illustrating the practicality of the approach for rapid frame rates. In addition, advanced signal processing approaches were used to investigate the potential of multispectral single-photon depth imaging in target discrimination and recognition, in free-space and underwater environments. Finally, a LiDAR model was developed and validated using experimental data. The model was used to estimate the performance of the system under a variety of scattering conditions and system parameters

NONCONTACT DIFFUSE CORRELATION TOMOGRAPHY OF BREAST TUMOR

Since aggressive cancers are frequently hypermetabolic with angiogenic vessels, quantification of blood flow (BF) can be vital for cancer diagnosis. Our laboratory has developed a noncontact diffuse correlation tomography (ncDCT) system for 3-D imaging of BF distribution in deep tissues (up to centimeters). The ncDCT system employs two sets of optical lenses to project source and detector fibers respectively onto the tissue surface, and applies finite element framework to model light transportation in complex tissue geometries. This thesis reports our first step to adapt the ncDCT system for 3-D imaging of BF contrasts in human breast tumors. A commercial 3-D camera was used to obtain breast surface geometry which was then converted to a solid volume mesh. An ncDCT probe scanned over a region of interest on the breast mesh surface and the measured boundary data were used for 3-D image reconstruction of BF distribution. This technique was tested with computer simulations and in 28 patients with breast tumors. Results from computer simulations suggest that relatively high accuracy can be achieved when the entire tumor was within the sensitive region of diffuse light. Image reconstruction with a priori knowledge of the tumor volume and location can significantly improve the accuracy in recovery of tumor BF contrasts. In vivo ncDCT imaging results from the majority of breast tumors showed higher BF contrasts in the tumor regions compared to the surrounding tissues. Reconstructed tumor depths and dimensions matched ultrasound imaging results when the tumors were within the sensitive region of light propagation. The results demonstrate that ncDCT system has the potential to image BF distributions in soft and vulnerable tissues without distorting tissue hemodynamics. In addition to this primary study, detector fibers with different modes (i.e., single-mode, few-mode, multimode) for photon collection were experimentally explored to improve the signal-to-noise ratio of diffuse correlation spectroscopy flow-oximeter measurements

Computer-Aided, Multi-Modal, and Compression Diffuse Optical Studies of Breast Tissue

Diffuse Optical Tomography and Spectroscopy permit measurement of important physiological parameters non-invasively through ~10 cm of tissue. I have applied these techniques in measurements of human breast and breast cancer. My thesis integrates three loosely connected themes in this context: multi-modal breast cancer imaging, automated data analysis of breast cancer images, and microvascular hemodynamics of breast under compression. As per the first theme, I describe construction, testing, and the initial clinical usage of two generations of imaging systems for simultaneous diffuse optical and magnetic resonance imaging. The second project develops a statistical analysis of optical breast data from many spatial locations in a population of cancers to derive a novel optical signature of malignancy; I then apply this data-derived signature for localization of cancer in additional subjects. Finally, I construct and deploy diffuse optical instrumentation to measure blood content and blood flow during breast compression; besides optics, this research has implications for any method employing breast compression, e.g., mammography

An evaluation of Fourier transform infrared spectroscopy for the characterisation of organic compounds in art and archaeology

The application of Fourier transform infrared spectroscopy (FT-IR) to the characterization of materials in art and archaeology is evaluated. The diffuse reflectance accessory was used extensively and an infrared microscope was utilized for microscopic samples. The development and theory of diffuse reflectance FT-IR spectroscopy are given and a brief outline of previous use of infrared spectroscopy in archaeological and art conservation is included. The experimental procedures and sample handling used in the research are explained in detail. Diffuse reflectance spectra of several classes of organic materials available in antiquity are presented. The classes of organic materials include Wcuces, fats and oils, bituminous materials, resins, amber, shellac, pitch, gums and gum resins and proteins. The spectra of the reference materials are interpreted in the light of the known information on chemical structure. Several examples of archaeological specimens which have been characterized are included. Two large groups of modern materials, a group of plastic sculptures and a collection of early plastic objects were characterized. Areas for future work include an expanded reference collection of modern materials and the use of J-CAMP-DX programming language for interlaboratory exchange of data which is independent of the brand of spectrometer used