Dense semantic labeling of sub-decimeter resolution images with convolutional neural networks

Semantic labeling (or pixel-level land-cover classification) in ultra-high resolution imagery (< 10cm) requires statistical models able to learn high level concepts from spatial data, with large appearance variations. Convolutional Neural Networks (CNNs) achieve this goal by learning discriminatively a hierarchy of representations of increasing abstraction. In this paper we present a CNN-based system relying on an downsample-then-upsample architecture. Specifically, it first learns a rough spatial map of high-level representations by means of convolutions and then learns to upsample them back to the original resolution by deconvolutions. By doing so, the CNN learns to densely label every pixel at the original resolution of the image. This results in many advantages, including i) state-of-the-art numerical accuracy, ii) improved geometric accuracy of predictions and iii) high efficiency at inference time. We test the proposed system on the Vaihingen and Potsdam sub-decimeter resolution datasets, involving semantic labeling of aerial images of 9cm and 5cm resolution, respectively. These datasets are composed by many large and fully annotated tiles allowing an unbiased evaluation of models making use of spatial information. We do so by comparing two standard CNN architectures to the proposed one: standard patch classification, prediction of local label patches by employing only convolutions and full patch labeling by employing deconvolutions. All the systems compare favorably or outperform a state-of-the-art baseline relying on superpixels and powerful appearance descriptors. The proposed full patch labeling CNN outperforms these models by a large margin, also showing a very appealing inference time.Comment: Accepted in IEEE Transactions on Geoscience and Remote Sensing, 201

Paying Attention to Multiscale Feature Maps in Multimodal Image Matching

We propose an attention-based approach for multimodal image patch matching using a Transformer encoder attending to the feature maps of a multiscale Siamese CNN. Our encoder is shown to efficiently aggregate multiscale image embeddings while emphasizing task-specific appearance-invariant image cues. We also introduce an attention-residual architecture, using a residual connection bypassing the encoder. This additional learning signal facilitates end-to-end training from scratch. Our approach is experimentally shown to achieve new state-of-the-art accuracy on both multimodal and single modality benchmarks, illustrating its general applicability. To the best of our knowledge, this is the first successful implementation of the Transformer encoder architecture to the multimodal image patch matching task

What-and-Where to Match: Deep Spatially Multiplicative Integration Networks for Person Re-identification

Matching pedestrians across disjoint camera views, known as person re-identification (re-id), is a challenging problem that is of importance to visual recognition and surveillance. Most existing methods exploit local regions within spatial manipulation to perform matching in local correspondence. However, they essentially extract \emph{fixed} representations from pre-divided regions for each image and perform matching based on the extracted representation subsequently. For models in this pipeline, local finer patterns that are crucial to distinguish positive pairs from negative ones cannot be captured, and thus making them underperformed. In this paper, we propose a novel deep multiplicative integration gating function, which answers the question of \emph{what-and-where to match} for effective person re-id. To address \emph{what} to match, our deep network emphasizes common local patterns by learning joint representations in a multiplicative way. The network comprises two Convolutional Neural Networks (CNNs) to extract convolutional activations, and generates relevant descriptors for pedestrian matching. This thus, leads to flexible representations for pair-wise images. To address \emph{where} to match, we combat the spatial misalignment by performing spatially recurrent pooling via a four-directional recurrent neural network to impose spatial dependency over all positions with respect to the entire image. The proposed network is designed to be end-to-end trainable to characterize local pairwise feature interactions in a spatially aligned manner. To demonstrate the superiority of our method, extensive experiments are conducted over three benchmark data sets: VIPeR, CUHK03 and Market-1501.Comment: Published at Pattern Recognition, Elsevie

Deep learning in remote sensing: a review

Standing at the paradigm shift towards data-intensive science, machine learning techniques are becoming increasingly important. In particular, as a major breakthrough in the field, deep learning has proven as an extremely powerful tool in many fields. Shall we embrace deep learning as the key to all? Or, should we resist a 'black-box' solution? There are controversial opinions in the remote sensing community. In this article, we analyze the challenges of using deep learning for remote sensing data analysis, review the recent advances, and provide resources to make deep learning in remote sensing ridiculously simple to start with. More importantly, we advocate remote sensing scientists to bring their expertise into deep learning, and use it as an implicit general model to tackle unprecedented large-scale influential challenges, such as climate change and urbanization.Comment: Accepted for publication IEEE Geoscience and Remote Sensing Magazin

Inferring Geodesic Cerebrovascular Graphs: Image Processing, Topological Alignment and Biomarkers Extraction

A vectorial representation of the vascular network that embodies quantitative features - location, direction, scale, and bifurcations - has many potential neuro-vascular applications. Patient-specific models support computer-assisted surgical procedures in neurovascular interventions, while analyses on multiple subjects are essential for group-level studies on which clinical prediction and therapeutic inference ultimately depend. This first motivated the development of a variety of methods to segment the cerebrovascular system. Nonetheless, a number of limitations, ranging from data-driven inhomogeneities, the anatomical intra- and inter-subject variability, the lack of exhaustive ground-truth, the need for operator-dependent processing pipelines, and the highly non-linear vascular domain, still make the automatic inference of the cerebrovascular topology an open problem. In this thesis, brain vessels’ topology is inferred by focusing on their connectedness. With a novel framework, the brain vasculature is recovered from 3D angiographies by solving a connectivity-optimised anisotropic level-set over a voxel-wise tensor field representing the orientation of the underlying vasculature. Assuming vessels joining by minimal paths, a connectivity paradigm is formulated to automatically determine the vascular topology as an over-connected geodesic graph. Ultimately, deep-brain vascular structures are extracted with geodesic minimum spanning trees. The inferred topologies are then aligned with similar ones for labelling and propagating information over a non-linear vectorial domain, where the branching pattern of a set of vessels transcends a subject-specific quantized grid. Using a multi-source embedding of a vascular graph, the pairwise registration of topologies is performed with the state-of-the-art graph matching techniques employed in computer vision. Functional biomarkers are determined over the neurovascular graphs with two complementary approaches. Efficient approximations of blood flow and pressure drop account for autoregulation and compensation mechanisms in the whole network in presence of perturbations, using lumped-parameters analog-equivalents from clinical angiographies. Also, a localised NURBS-based parametrisation of bifurcations is introduced to model fluid-solid interactions by means of hemodynamic simulations using an isogeometric analysis framework, where both geometry and solution profile at the interface share the same homogeneous domain. Experimental results on synthetic and clinical angiographies validated the proposed formulations. Perspectives and future works are discussed for the group-wise alignment of cerebrovascular topologies over a population, towards defining cerebrovascular atlases, and for further topological optimisation strategies and risk prediction models for therapeutic inference. Most of the algorithms presented in this work are available as part of the open-source package VTrails

Automatic segmentation of MR brain images with a convolutional neural network

Automatic segmentation in MR brain images is important for quantitative analysis in large-scale studies with images acquired at all ages. This paper presents a method for the automatic segmentation of MR brain images into a number of tissue classes using a convolutional neural network. To ensure that the method obtains accurate segmentation details as well as spatial consistency, the network uses multiple patch sizes and multiple convolution kernel sizes to acquire multi-scale information about each voxel. The method is not dependent on explicit features, but learns to recognise the information that is important for the classification based on training data. The method requires a single anatomical MR image only. The segmentation method is applied to five different data sets: coronal T2-weighted images of preterm infants acquired at 30 weeks postmenstrual age (PMA) and 40 weeks PMA, axial T2- weighted images of preterm infants acquired at 40 weeks PMA, axial T1-weighted images of ageing adults acquired at an average age of 70 years, and T1-weighted images of young adults acquired at an average age of 23 years. The method obtained the following average Dice coefficients over all segmented tissue classes for each data set, respectively: 0.87, 0.82, 0.84, 0.86 and 0.91. The results demonstrate that the method obtains accurate segmentations in all five sets, and hence demonstrates its robustness to differences in age and acquisition protocol

Multi-level Feature Fusion-based CNN for Local Climate Zone Classification from Sentinel-2 Images: Benchmark Results on the So2Sat LCZ42 Dataset

As a unique classification scheme for urban forms and functions, the local climate zone (LCZ) system provides essential general information for any studies related to urban environments, especially on a large scale. Remote sensing data-based classification approaches are the key to large-scale mapping and monitoring of LCZs. The potential of deep learning-based approaches is not yet fully explored, even though advanced convolutional neural networks (CNNs) continue to push the frontiers for various computer vision tasks. One reason is that published studies are based on different datasets, usually at a regional scale, which makes it impossible to fairly and consistently compare the potential of different CNNs for real-world scenarios. This study is based on the big So2Sat LCZ42 benchmark dataset dedicated to LCZ classification. Using this dataset, we studied a range of CNNs of varying sizes. In addition, we proposed a CNN to classify LCZs from Sentinel-2 images, Sen2LCZ-Net. Using this base network, we propose fusing multi-level features using the extended Sen2LCZ-Net-MF. With this proposed simple network architecture and the highly competitive benchmark dataset, we obtain results that are better than those obtained by the state-of-the-art CNNs, while requiring less computation with fewer layers and parameters. Large-scale LCZ classification examples of completely unseen areas are presented, demonstrating the potential of our proposed Sen2LCZ-Net-MF as well as the So2Sat LCZ42 dataset. We also intensively investigated the influence of network depth and width and the effectiveness of the design choices made for Sen2LCZ-Net-MF. Our work will provide important baselines for future CNN-based algorithm developments for both LCZ classification and other urban land cover land use classification