Coupled Dictionary Learning for Multi-contrast MRI Reconstruction

Medical imaging tasks often involve multiple contrasts, such as T1-and T2-weighted magnetic resonance imaging (MRI) data. These contrasts capture information associated with the same underlying anatomy and thus exhibit similarities. In this paper, we propose a Coupled Dictionary Learning based multi-contrast MRI reconstruction (CDLMRI) approach to leverage an available guidance contrast to restore the target contrast. Our approach consists of three stages: coupled dictionary learning, coupled sparse denoising, and k-space consistency enforcing. The first stage learns a group of dictionaries that capture correlations among multiple contrasts. By capitalizing on the learned adaptive dictionaries, the second stage performs joint sparse coding to denoise the corrupted target image with the aid of a guidance contrast. The third stage enforces consistency between the denoised image and the measurements in the k-space domain. Numerical experiments on the retrospective under-sampling of clinical MR images demonstrate that incorporating additional guidance contrast via our design improves MRI reconstruction, compared to state-of-the-art approaches

Coupled Dictionary Learning for Multi-contrast MRI Reconstruction

Magnetic resonance (MR) imaging tasks often involve multiple contrasts, such as T1-weighted, T2-weighted and Fluid-attenuated inversion recovery (FLAIR) data. These contrasts capture information associated with the same underlying anatomy and thus exhibit similarities in either structure level or gray level. In this paper, we propose a Coupled Dictionary Learning based multi-contrast MRI reconstruction (CDLMRI) approach to leverage the dependency correlation between different contrasts for guided or joint reconstruction from their under-sampled k-space data. Our approach iterates between three stages: coupled dictionary learning, coupled sparse denoising, and enforcing k-space consistency. The first stage learns a set of dictionaries that not only are adaptive to the contrasts, but also capture correlations among multiple contrasts in a sparse transform domain. By capitalizing on the learned dictionaries, the second stage performs coupled sparse coding to remove the aliasing and noise in the corrupted contrasts. The third stage enforces consistency between the denoised contrasts and the measurements in the k-space domain. Numerical experiments, consisting of retrospective under-sampling of various MRI contrasts with a variety of sampling schemes, demonstrate that CDLMRI is capable of capturing structural dependencies between different contrasts. The learned priors indicate notable advantages in multi-contrast MR imaging and promising applications in quantitative MR imaging such as MR fingerprinting

Multi-modal Image Processing based on Coupled Dictionary Learning

In real-world scenarios, many data processing problems often involve heterogeneous images associated with different imaging modalities. Since these multimodal images originate from the same phenomenon, it is realistic to assume that they share common attributes or characteristics. In this paper, we propose a multi-modal image processing framework based on coupled dictionary learning to capture similarities and disparities between different image modalities. In particular, our framework can capture favorable structure similarities across different image modalities such as edges, corners, and other elementary primitives in a learned sparse transform domain, instead of the original pixel domain, that can be used to improve a number of image processing tasks such as denoising, inpainting, or super-resolution. Practical experiments demonstrate that incorporating multimodal information using our framework brings notable benefits.Comment: SPAWC 2018, 19th IEEE International Workshop On Signal Processing Advances In Wireless Communication

(An overview of) Synergistic reconstruction for multimodality/multichannel imaging methods

Imaging is omnipresent in modern society with imaging devices based on a zoo of physical principles, probing a specimen across different wavelengths, energies and time. Recent years have seen a change in the imaging landscape with more and more imaging devices combining that which previously was used separately. Motivated by these hardware developments, an ever increasing set of mathematical ideas is appearing regarding how data from different imaging modalities or channels can be synergistically combined in the image reconstruction process, exploiting structural and/or functional correlations between the multiple images. Here we review these developments, give pointers to important challenges and provide an outlook as to how the field may develop in the forthcoming years. This article is part of the theme issue 'Synergistic tomographic image reconstruction: part 1'

Video Compressive Sensing for Dynamic MRI

We present a video compressive sensing framework, termed kt-CSLDS, to accelerate the image acquisition process of dynamic magnetic resonance imaging (MRI). We are inspired by a state-of-the-art model for video compressive sensing that utilizes a linear dynamical system (LDS) to model the motion manifold. Given compressive measurements, the state sequence of an LDS can be first estimated using system identification techniques. We then reconstruct the observation matrix using a joint structured sparsity assumption. In particular, we minimize an objective function with a mixture of wavelet sparsity and joint sparsity within the observation matrix. We derive an efficient convex optimization algorithm through alternating direction method of multipliers (ADMM), and provide a theoretical guarantee for global convergence. We demonstrate the performance of our approach for video compressive sensing, in terms of reconstruction accuracy. We also investigate the impact of various sampling strategies. We apply this framework to accelerate the acquisition process of dynamic MRI and show it achieves the best reconstruction accuracy with the least computational time compared with existing algorithms in the literature.Comment: 30 pages, 9 figure