Asymptotic goodness-of-fit tests for the Palm mark distribution of stationary point processes with correlated marks

We consider spatially homogeneous marked point patterns in an unboundedly expanding convex sampling window. Our main objective is to identify the distribution of the typical mark by constructing an asymptotic $\chi^2$-goodness-of-fit test. The corresponding test statistic is based on a natural empirical version of the Palm mark distribution and a smoothed covariance estimator which turns out to be mean square consistent. Our approach does not require independent marks and allows dependences between the mark field and the point pattern. Instead we impose a suitable $\beta$-mixing condition on the underlying stationary marked point process which can be checked for a number of Poisson-based models and, in particular, in the case of geostatistical marking. In order to study test performance, our test approach is applied to detect anisotropy of specific Boolean models.Comment: Published in at http://dx.doi.org/10.3150/13-BEJ523 the Bernoulli (http://isi.cbs.nl/bernoulli/) by the International Statistical Institute/Bernoulli Society (http://isi.cbs.nl/BS/bshome.htm). arXiv admin note: substantial text overlap with arXiv:1205.504

The Genomic HyperBrowser: inferential genomics at the sequence level

The immense increase in the generation of genomic scale data poses an unmet analytical challenge, due to a lack of established methodology with the required flexibility and power. We propose a first principled approach to statistical analysis of sequence-level genomic information. We provide a growing collection of generic biological investigations that query pairwise relations between tracks, represented as mathematical objects, along the genome. The Genomic HyperBrowser implements the approach and is available at http://hyperbrowser.uio.no

The Ambiguity of Simplicity

A system's apparent simplicity depends on whether it is represented classically or quantally. This is not so surprising, as classical and quantum physics are descriptive frameworks built on different assumptions that capture, emphasize, and express different properties and mechanisms. What is surprising is that, as we demonstrate, simplicity is ambiguous: the relative simplicity between two systems can change sign when moving between classical and quantum descriptions. Thus, notions of absolute physical simplicity---minimal structure or memory---at best form a partial, not a total, order. This suggests that appeals to principles of physical simplicity, via Ockham's Razor or to the "elegance" of competing theories, may be fundamentally subjective, perhaps even beyond the purview of physics itself. It also raises challenging questions in model selection between classical and quantum descriptions. Fortunately, experiments are now beginning to probe measures of simplicity, creating the potential to directly test for ambiguity.Comment: 7 pages, 6 figures, http://csc.ucdavis.edu/~cmg/compmech/pubs/aos.ht