Focused Proofreading: Efficiently Extracting Connectomes from Segmented EM Images

Identifying complex neural circuitry from electron microscopic (EM) images may help unlock the mysteries of the brain. However, identifying this circuitry requires time-consuming, manual tracing (proofreading) due to the size and intricacy of these image datasets, thus limiting state-of-the-art analysis to very small brain regions. Potential avenues to improve scalability include automatic image segmentation and crowd sourcing, but current efforts have had limited success. In this paper, we propose a new strategy, focused proofreading, that works with automatic segmentation and aims to limit proofreading to the regions of a dataset that are most impactful to the resulting circuit. We then introduce a novel workflow, which exploits biological information such as synapses, and apply it to a large dataset in the fly optic lobe. With our techniques, we achieve significant tracing speedups of 3-5x without sacrificing the quality of the resulting circuit. Furthermore, our methodology makes the task of proofreading much more accessible and hence potentially enhances the effectiveness of crowd sourcing

A graph-based mathematical morphology reader

This survey paper aims at providing a "literary" anthology of mathematical morphology on graphs. It describes in the English language many ideas stemming from a large number of different papers, hence providing a unified view of an active and diverse field of research

OVSNet : Towards One-Pass Real-Time Video Object Segmentation

Video object segmentation aims at accurately segmenting the target object regions across consecutive frames. It is technically challenging for coping with complicated factors (e.g., shape deformations, occlusion and out of the lens). Recent approaches have largely solved them by using backforth re-identification and bi-directional mask propagation. However, their methods are extremely slow and only support offline inference, which in principle cannot be applied in real time. Motivated by this observation, we propose a efficient detection-based paradigm for video object segmentation. We propose an unified One-Pass Video Segmentation framework (OVS-Net) for modeling spatial-temporal representation in a unified pipeline, which seamlessly integrates object detection, object segmentation, and object re-identification. The proposed framework lends itself to one-pass inference that effectively and efficiently performs video object segmentation. Moreover, we propose a maskguided attention module for modeling the multi-scale object boundary and multi-level feature fusion. Experiments on the challenging DAVIS 2017 demonstrate the effectiveness of the proposed framework with comparable performance to the state-of-the-art, and the great efficiency about 11.5 FPS towards pioneering real-time work to our knowledge, more than 5 times faster than other state-of-the-art methods.Comment: 10 pages, 6 figure

Graph Spectral Image Processing

Recent advent of graph signal processing (GSP) has spurred intensive studies of signals that live naturally on irregular data kernels described by graphs (e.g., social networks, wireless sensor networks). Though a digital image contains pixels that reside on a regularly sampled 2D grid, if one can design an appropriate underlying graph connecting pixels with weights that reflect the image structure, then one can interpret the image (or image patch) as a signal on a graph, and apply GSP tools for processing and analysis of the signal in graph spectral domain. In this article, we overview recent graph spectral techniques in GSP specifically for image / video processing. The topics covered include image compression, image restoration, image filtering and image segmentation

Recent Advances in Graph Partitioning

We survey recent trends in practical algorithms for balanced graph partitioning together with applications and future research directions