14,210 research outputs found
We Could, but Should We? Ethical Considerations for Providing Access to GeoCities and Other Historical Digital Collections
We live in an era in which the ways that we can make sense of our past are evolving as more artifacts from that past become digital. At the same time, the responsibilities of traditional gatekeepers who have negotiated the ethics of historical data collection and use, such as librarians and archivists, are increasingly being sidelined by the system builders who decide whether and how to provide access to historical digital collections, often without sufficient reflection on the ethical issues at hand. It is our aim to better prepare system builders to grapple with these issues. This paper focuses discussions around one such digital collection from the dawn of the web, asking what sorts of analyses can and should be conducted on archival copies of the GeoCities web hosting platform that dates to 1994.This research was supported by the Natural Sciences and Engineering Research Council of Canada, the Social Sciences and Humanities Research Council of Canada, the US National Science Foundation (grants 1618695 and 1704369), the Andrew W. Mellon Foundation, Start Smart Labs, and Compute Canada
Visual Information Retrieval in Endoscopic Video Archives
In endoscopic procedures, surgeons work with live video streams from the
inside of their subjects. A main source for documentation of procedures are
still frames from the video, identified and taken during the surgery. However,
with growing demands and technical means, the streams are saved to storage
servers and the surgeons need to retrieve parts of the videos on demand. In
this submission we present a demo application allowing for video retrieval
based on visual features and late fusion, which allows surgeons to re-find
shots taken during the procedure.Comment: Paper accepted at the IEEE/ACM 13th International Workshop on
Content-Based Multimedia Indexing (CBMI) in Prague (Czech Republic) between
10 and 12 June 201
Convolutional Sparse Kernel Network for Unsupervised Medical Image Analysis
The availability of large-scale annotated image datasets and recent advances
in supervised deep learning methods enable the end-to-end derivation of
representative image features that can impact a variety of image analysis
problems. Such supervised approaches, however, are difficult to implement in
the medical domain where large volumes of labelled data are difficult to obtain
due to the complexity of manual annotation and inter- and intra-observer
variability in label assignment. We propose a new convolutional sparse kernel
network (CSKN), which is a hierarchical unsupervised feature learning framework
that addresses the challenge of learning representative visual features in
medical image analysis domains where there is a lack of annotated training
data. Our framework has three contributions: (i) We extend kernel learning to
identify and represent invariant features across image sub-patches in an
unsupervised manner. (ii) We initialise our kernel learning with a layer-wise
pre-training scheme that leverages the sparsity inherent in medical images to
extract initial discriminative features. (iii) We adapt a multi-scale spatial
pyramid pooling (SPP) framework to capture subtle geometric differences between
learned visual features. We evaluated our framework in medical image retrieval
and classification on three public datasets. Our results show that our CSKN had
better accuracy when compared to other conventional unsupervised methods and
comparable accuracy to methods that used state-of-the-art supervised
convolutional neural networks (CNNs). Our findings indicate that our
unsupervised CSKN provides an opportunity to leverage unannotated big data in
medical imaging repositories.Comment: Accepted by Medical Image Analysis (with a new title 'Convolutional
Sparse Kernel Network for Unsupervised Medical Image Analysis'). The
manuscript is available from following link
(https://doi.org/10.1016/j.media.2019.06.005
MinMax Radon Barcodes for Medical Image Retrieval
Content-based medical image retrieval can support diagnostic decisions by
clinical experts. Examining similar images may provide clues to the expert to
remove uncertainties in his/her final diagnosis. Beyond conventional feature
descriptors, binary features in different ways have been recently proposed to
encode the image content. A recent proposal is "Radon barcodes" that employ
binarized Radon projections to tag/annotate medical images with content-based
binary vectors, called barcodes. In this paper, MinMax Radon barcodes are
introduced which are superior to "local thresholding" scheme suggested in the
literature. Using IRMA dataset with 14,410 x-ray images from 193 different
classes, the advantage of using MinMax Radon barcodes over \emph{thresholded}
Radon barcodes are demonstrated. The retrieval error for direct search drops by
more than 15\%. As well, SURF, as a well-established non-binary approach, and
BRISK, as a recent binary method are examined to compare their results with
MinMax Radon barcodes when retrieving images from IRMA dataset. The results
demonstrate that MinMax Radon barcodes are faster and more accurate when
applied on IRMA images.Comment: To appear in proceedings of the 12th International Symposium on
Visual Computing, December 12-14, 2016, Las Vegas, Nevada, US
Deep Lesion Graphs in the Wild: Relationship Learning and Organization of Significant Radiology Image Findings in a Diverse Large-scale Lesion Database
Radiologists in their daily work routinely find and annotate significant
abnormalities on a large number of radiology images. Such abnormalities, or
lesions, have collected over years and stored in hospitals' picture archiving
and communication systems. However, they are basically unsorted and lack
semantic annotations like type and location. In this paper, we aim to organize
and explore them by learning a deep feature representation for each lesion. A
large-scale and comprehensive dataset, DeepLesion, is introduced for this task.
DeepLesion contains bounding boxes and size measurements of over 32K lesions.
To model their similarity relationship, we leverage multiple supervision
information including types, self-supervised location coordinates and sizes.
They require little manual annotation effort but describe useful attributes of
the lesions. Then, a triplet network is utilized to learn lesion embeddings
with a sequential sampling strategy to depict their hierarchical similarity
structure. Experiments show promising qualitative and quantitative results on
lesion retrieval, clustering, and classification. The learned embeddings can be
further employed to build a lesion graph for various clinically useful
applications. We propose algorithms for intra-patient lesion matching and
missing annotation mining. Experimental results validate their effectiveness.Comment: Accepted by CVPR2018. DeepLesion url adde
1st INCF Workshop on Sustainability of Neuroscience Databases
The goal of the workshop was to discuss issues related to the sustainability of neuroscience databases, identify problems and propose solutions, and formulate recommendations to the INCF. The report summarizes the discussions of invited participants from the neuroinformatics community as well as from other disciplines where sustainability issues have already been approached. The recommendations for the INCF involve rating, ranking, and supporting database sustainability
Apollo applications program data archives
Apollo applications program data archives to collect, store, retrieve, and distribute experiments-related dat
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