Design and Topology Optimisation of Tissue Scaffolds

Tissue restoration by tissue scaffolding is an emerging technique with many potential applications. While it is well-known that the structural properties of tissue scaffolds play a critical role in cell regrowth, it is usually unclear how optimal tissue regeneration can be achieved. This thesis hereby presents a computational investigation of tissue scaffold design and optimisation. This study proposes an isosurface-based characterisation and optimisation technique for the design of microscopic architecture, and a porosity-based approach for the design of macroscopic structure. The goal of this study is to physically define the optimal tissue scaffold construct, and to establish any link between cell viability and scaffold architecture. Single-objective and multi-objective topology optimisation was conducted at both microscopic and macroscopic scales to determine the ideal scaffold design. A high quality isosurface modelling technique was formulated and automated to define the microstructure in stereolithography format. Periodic structures with maximised permeability, and theoretically maximum diffusivity and bulk modulus were found using a modified level set method. Microstructures with specific effective diffusivity were also created by means of inverse homogenisation. Cell viability simulation was subsequently conducted to show that the optimised microstructures offered a more viable environment than those with random microstructure. The cell proliferation outcome in terms of cell number and survival rate was also improved through the optimisation of the macroscopic porosity profile. Additionally artificial vascular systems were created and optimised to enhance diffusive nutrient transport. The formation of vasculature in the optimisation process suggests that natural vascular systems acquire their fractal shapes through self-optimisation

Design and Topology Optimisation of Tissue Scaffolds

Tissue restoration by tissue scaffolding is an emerging technique with many potential applications. While it is well-known that the structural properties of tissue scaffolds play a critical role in cell regrowth, it is usually unclear how optimal tissue regeneration can be achieved. This thesis hereby presents a computational investigation of tissue scaffold design and optimisation. This study proposes an isosurface-based characterisation and optimisation technique for the design of microscopic architecture, and a porosity-based approach for the design of macroscopic structure. The goal of this study is to physically define the optimal tissue scaffold construct, and to establish any link between cell viability and scaffold architecture. Single-objective and multi-objective topology optimisation was conducted at both microscopic and macroscopic scales to determine the ideal scaffold design. A high quality isosurface modelling technique was formulated and automated to define the microstructure in stereolithography format. Periodic structures with maximised permeability, and theoretically maximum diffusivity and bulk modulus were found using a modified level set method. Microstructures with specific effective diffusivity were also created by means of inverse homogenisation. Cell viability simulation was subsequently conducted to show that the optimised microstructures offered a more viable environment than those with random microstructure. The cell proliferation outcome in terms of cell number and survival rate was also improved through the optimisation of the macroscopic porosity profile. Additionally artificial vascular systems were created and optimised to enhance diffusive nutrient transport. The formation of vasculature in the optimisation process suggests that natural vascular systems acquire their fractal shapes through self-optimisation

Computational Approach to Optimal Transport

Long-distance liquid transport in biosystems is provided by special branching systems of tubes (arteries, veins, plant vessels). Geometry of the systems possesses similar patterns and can be investigated by computer methods of pattern recognition. Here some results on plant leaf venation investigation are presented. The lengths, diameters and branching angles are estimated for the leaves of different shape, size and venation type. The statistical distributions of the measured parameters are similar to the corresponding ones which have been obtained for arterial beds. The both correspond to the model of optimal branching pipeline which provide liquid delivering at minimum total energy consumptions. The biomechanical model of liquid motion in a system consisting of a long thin tube with permeable walls which is embedded into a biological porous medium is considered. The pressure distributions and velocity fields for different geometry of the system are obtained. The main result is when the delivering liquid is completely absorbed by the alive cells in the porous medium the relation between the diameter and the length of the tube and the total volume of the medium which correspond to the measured data is reached

14th Conference on Dynamical Systems Theory and Applications DSTA 2017 ABSTRACTS

From Preface: This is the fourteen time when the conference “Dynamical Systems – Theory and Applications” gathers a numerous group of outstanding scientists and engineers, who deal with widely understood problems of theoretical and applied dynamics. Organization of the conference would not have been possible without a great effort of the staff of the Department of Automation, Biomechanics and Mechatronics. The patronage over the conference has been taken by the Committee of Mechanics of the Polish Academy of Sciences and the Ministry of Science and Higher Education. It is a great pleasure that our invitation has been accepted by so many people, including good colleagues and friends as well as a large group of researchers and scientists, who decided to participate in the conference for the first time. With proud and satisfaction we welcome nearly 250 persons from 38 countries all over the world. They decided to share the results of their research and many years experiences in the discipline of dynamical systems by submitting many very interesting papers. This booklet contains a collection of 375 abstracts, which have gained the acceptance of referees and have been qualified for publication in the conference proceedings [...]

Računalna mehanika u znanosti i inženjerstvu – Quo vadis

Computational Mechanics has many applications in science and engineering. Its range of application has been enlarged widely in the recent decades. Hence, nowadays areas such as biomechanics and additive manufacturing are among the new research topics, in which computational mechanics helps solve complex problems and processes. In this contribution, these emerging areas will be discussed together with new discretization schemes, e. g. virtual element method and particle methods, whereby the latter need high performance computing facilities in order to solve problems such as mixing in an accurate way. Failure analysis of structures and components is another topic that is developing fast. Here, modern computational approaches rely on the phase field method that simplifies discretizations schemes. All these approaches and methods are discussed and evaluated by means of examples.Računalna mehanika ima široku primjenu u znanosti i inženjerstvu. Njeno područje primjene se znatno povećalo u zadnjim desetljećima. Danas polja kao biomehanika i aditivna proizvodnja nova su područja istraživanja u kojima računalna mehanika pomaže rješavati složene probleme i procese. U radu se razmatraju ova granična područja zajedno s novim diskretizacijskim postupcima kao što su metoda virtualnih elemenata i metoda čestica, gdje potonja zahtijeva moćnu računalnu opremu da bi se mogli točno riješiti problemi kao što je miješanje. Analiza oštećenja konstrukcija i njenih komponenata je drugo područje koje se brzo razvija, pa se ovdje moderni računalni postupci odnose na metodu faznih polja koja pojednostavljuje diskretizacijske sheme. Svi navedeni postupci i metode su razmatrani i vrednovani u numeričkim primjerima

Finite element and mechanobiological modelling of vascular devices

There are two main surgical treatments for vascular diseases, (i) percutaneous stent deployment and (ii) replacement of an atherosclerotic artery with a vascular graft or tissue engineered blood vessel. The aim of this thesis was to develop computational models that could assist in the design of vascular stents and tissue engineered vascular grafts and scaffolds. In this context, finite element (FE) models of stent expansion in idealised and patient specific models of atherosclerotic arteries were developed. Different modelling strategies were investigated and an optimal modelling approach was identified which minimised computational cost without compromising accuracy. Numerical models of thin and thick strut stents were developed using this modelling approach to replicate the ISAR-STEREO clinical trial and the models identified arterial stresses as a suitable measure of stent induced vascular injury. In terms of evaluating vascular graft performance, mechanical characterisation experiments can be conducted in order to develop constitutive models that can be used in FE models of vascular grafts to predict their mechanical behaviour in-situ. In this context, bacterial cellulose (BC), a novel biomaterial, was mechanically characterised and a constitutive model was developed to describe its mechanical response. In addition, the interaction of smooth muscle cells with BC was studied using cell culture experiments. The constitutive model developed for BC was used as an input for a novel multi-scale mechanobiological modelling framework. The mechanobiological model was developed by coupling an FE model of a vascular scaffold and a lattice free agent based model of cell growth dynamics and remodelling in vascular scaffolds. By comparison with published in-vivo and in-vitro works, the model was found to successfully capture the key characteristics of vascular remodelling. It can therefore be used as a predictive tool for the growth and remodelling of vascular scaffolds and graft