6,543 research outputs found
Devito: Towards a generic Finite Difference DSL using Symbolic Python
Domain specific languages (DSL) have been used in a variety of fields to
express complex scientific problems in a concise manner and provide automated
performance optimization for a range of computational architectures. As such
DSLs provide a powerful mechanism to speed up scientific Python computation
that goes beyond traditional vectorization and pre-compilation approaches,
while allowing domain scientists to build applications within the comforts of
the Python software ecosystem. In this paper we present Devito, a new finite
difference DSL that provides optimized stencil computation from high-level
problem specifications based on symbolic Python expressions. We demonstrate
Devito's symbolic API and performance advantages over traditional Python
acceleration methods before highlighting its use in the scientific context of
seismic inversion problems.Comment: pyHPC 2016 conference submissio
Scather: programming with multi-party computation and MapReduce
We present a prototype of a distributed computational infrastructure, an associated high level programming language, and an underlying formal framework that allow multiple parties to leverage their own cloud-based computational resources (capable of supporting MapReduce [27] operations) in concert with multi-party computation (MPC) to execute statistical analysis algorithms that have privacy-preserving properties. Our architecture allows a data analyst unfamiliar with MPC to: (1) author an analysis algorithm that is agnostic with regard to data privacy policies, (2) to use an automated process to derive algorithm implementation variants that have different privacy and performance properties, and (3) to compile those implementation variants so that they can be deployed on an infrastructures that allows computations to take place locally within each participant’s MapReduce cluster as well as across all the participants’ clusters using an MPC protocol. We describe implementation details of the architecture, discuss and demonstrate how the formal framework enables the exploration of tradeoffs between the efficiency and privacy properties of an analysis algorithm, and present two example applications that illustrate how such an infrastructure can be utilized in practice.This work was supported in part by NSF Grants: #1430145, #1414119, #1347522, and #1012798
From Physics Model to Results: An Optimizing Framework for Cross-Architecture Code Generation
Starting from a high-level problem description in terms of partial
differential equations using abstract tensor notation, the Chemora framework
discretizes, optimizes, and generates complete high performance codes for a
wide range of compute architectures. Chemora extends the capabilities of
Cactus, facilitating the usage of large-scale CPU/GPU systems in an efficient
manner for complex applications, without low-level code tuning. Chemora
achieves parallelism through MPI and multi-threading, combining OpenMP and
CUDA. Optimizations include high-level code transformations, efficient loop
traversal strategies, dynamically selected data and instruction cache usage
strategies, and JIT compilation of GPU code tailored to the problem
characteristics. The discretization is based on higher-order finite differences
on multi-block domains. Chemora's capabilities are demonstrated by simulations
of black hole collisions. This problem provides an acid test of the framework,
as the Einstein equations contain hundreds of variables and thousands of terms.Comment: 18 pages, 4 figures, accepted for publication in Scientific
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