Leaf nitrogen determination using non-destructive techniques–A review

© 2017 Taylor & Francis Group, LLC. The optimisation of plant nitrogen-use-efficiency (NUE) has a direct impact on increasing crop production by optimising use of nitrogen fertiliser. Moreover, it protects environment from negative effects of nitrate leaching and nitrous oxide production. Accordingly, nitrogen (N) management in agriculture systems has been major focus of many researchers. Improvement of NUE can be achieved through several methods including more accurate measurement of foliar N contents of crops during different growth phases. There are two types of methods to diagnose foliar N status: destructive and non-destructive. Destructive methods are expensive and time-consuming, as they require tissue sampling and subsequent laboratory analysis. Thus, many farmers find destructive methods to be less attractive. Non-destructive methods are rapid and less expensive but are usually less accurate. Accordingly, improving the accuracy of non-destructive N estimations has become a common goal of many researchers, and various methods varying in complexity and optimality have been proposed for this purpose. This paper reviews various commonly used non-destructive methods for estimating foliar N status of plants

Early Possible Detection of Downy Mildew in Cucumis sativus’ through Hyperspectral Image Analysis

Hyperspectral Imaging has become an important method in monitoring vegetation and crops and producing information regarding onset of diseases. The availability of spectrometers in the market is not only costly but also requires standard-operating-procedures in using them. The use of Specim IQ, a handheld spectrometer with a wavelength-captivating-range of 400-1000 nm has been found to be optimistic in field-application with least complexity.  In this paper, an early possible detection of downy mildew has been analysed through the difference in spectral distribution patterns through the reflectance-wavelength graph so that the well-advanced result may avert any significant damage over the visual eyes. View Article DOI: 10.47856/ijaast.2022.v09i04.00

Visible and Hyperspectral Imaging Systems for the Detection and Discrimination of Mechanical and Microbiological Damage of Mushrooms

Horticultural products such as mushrooms are exposed to environmental conditions during their postharvest life, which may affect product quality. Loss of whiteness during storage is particularly important in the mushroom industry. Rough handling and distribution, fruiting body senescence and bacterial infections are among the main causes of mushroom discolouration. The aim of this work was to study the use of visible and hyperspectral imaging (HSI) systems for the detection and discrimination of mechanical and microbiological damage of mushrooms. This piece of research involved a) monitoring the browning of mushroom with visible computer imaging systems, b) investigating the effect of mechanical damage on the kinetics of enzymes responsible for mushroom browning, c) exploring the potential use of Vis-NIR HSI to predict PPO activity in mushroom caps and d) studying the potential application of Vis-NIR HSI for microbial and viral detection on mushroom caps and for their discrimination from mechanical damage. Results presented in this thesis show that the efficacy of commercial webcams was limited in the detection of mechanical damage on mushroom caps. Damage increased the activity of PPOs on mushroom pileipellis, but the effect of the extent of damage was not significant at the levels of study. Vis-NIR HSI showed some potential as a tool to estimate the activity of PPO enzymes on mushroom caps. The combination of HSI with chemometric tools allowed for the differentiation of mechanically and microbiologically damaged mushroom classes. Results from this study could be used for developing non-destructive monitoring systems for mechanical and microbiological damage detection and discrimination. The potential application of such systems as on-line process analytical tools would facilitate rapid assessment of mushroom quality.

Assessment of downy mildew in grapevine using computer vision and fuzzy logic. Development and validation of a new method

Downy mildew is a major disease of grapevine. Conventional methods for assessing crop diseases are time-consuming and require trained personnel. This work aimed to develop and validate a new method to automatically estimate the severity of downy mildew in grapevine leaves using fuzzy logic and computer vision techniques. Leaf discs of two grapevine varieties were inoculated with Plasmopara viticola and subsequently, RGB images were acquired under indoor conditions. Computer vision techniques were applied for leaf disc location in Petri dishes, image pre-processing and segmentation of pre-processed disc images to separate the pixels representing downy mildew sporulation from the rest of the leaf. Fuzzy logic was applied to improve the segmentation of disc images, rating pixels with a degree of infection according to the intensity of sporulation. To validate the new method, the downy mildew severity was visually evaluated by eleven experts and averaged score was used as the reference value. A coefficient of determination (R2) of 0.87 and a root mean squared error (RMSE) of 7.61 % was observed between the downy mildew severity obtained by the new method and the visual assessment values. Classification of the severity of the infection into three levels was also attempted, achieving an accuracy of 86 % and an F1 score of 0.78. These results indicate that computer vision and fuzzy logic can be used to automatically estimate the severity of downy mildew in grapevine leaves. A new method has been developed and validated to assess the severity of downy mildew in grapevine. The new method can be adapted to assess the severity of other diseases and crops in agriculture.European Commission 828940Spanish Government PID2020-119478GB-I00Universidad de La Rioja 1150/2020 Gobierno de La Rioj

Smartphone-based photogrammetric 3D modelling assessment by comparison with radiological medical imaging for cranial deformation analysis

[EN] Cranial deformation in infants is a common problem in paediatric consultations. The most accurate medical diagnostic imaging methodologies are Computed Tomography (CT) and Magnetic Resonance Image (MRI). However, these radiological imaging technologies involve high costs and are invasive, especially for infants. Therefore, they are only used for severe cases, while milder cases are evaluated using less precise methodologies, such as callipers or measure tapes. The use of smartphone-based photogrammetric 3D models has been presented as a possible alternative to extracting accurate and complete external information in a low-cost, non-invasive manner but its accuracy is still to be tested. In this study, photogrammetric and radiological cranial 3D models have been obtained for a set of 10 patients. In order to compare them, the distances between model surfaces have been calculated. Results show an overestimation of the photogrammetric models up to 3.2 mm due to both hair and usage of caps. However, differences in shape, given by the standard deviation of the distances are below 1.5 mm for every patient. The accuracy of low-cost smartphone-based photogrammetric models has been found to be comparable to medical diagnostic imaging methodologies used for cranial deformation analysis. (C) 2018 Elsevier Ltd. All rights reserved.This study was supported by Conselleria d Educació of the Generalitat Valenciana and the European Social Fund under the grant number ACIF/2017/056. The authors also acknowledge the partial support from the 2017 Subprogram B No. B03 (Acronym HEAD3D++) to the development of coordinated actions between the Universitat Politècnica de València and the Hospital Universitari i Politècnic/Instituto de Investigación Sanitaria La Fe.Barbero-García, I.; Lerma, JL.; Miranda, P.; Marqués-Mateu, Á. (2019). Smartphone-based photogrammetric 3D modelling assessment by comparison with radiological medical imaging for cranial deformation analysis. Measurement. 131:372-379. https://doi.org/10.1016/j.measurement.2018.08.059S37237913

Field phenomics:will it enable crop improvement?

Field phenomics has been identified as a promising enabling technology to assist plant breeders with the development of improved cultivars for farmers. Yet, despite much investment, there are few examples demonstrating the application of phenomics within a plant breeding program. We review recent progress in field phenomics and highlight the importance of targeting breeders’ needs, rather than perceived technology needs, through developing and enhancing partnerships between phenomics researchers and plant breeders

Hyperspectral Imaging from Ground Based Mobile Platforms and Applications in Precision Agriculture

This thesis focuses on the use of line scanning hyperspectral sensors on mobile ground based platforms and applying them to agricultural applications. First this work deals with the geometric and radiometric calibration and correction of acquired hyperspectral data. When operating at low altitudes, changing lighting conditions are common and inevitable, complicating the retrieval of a surface's reflectance, which is solely a function of its physical structure and chemical composition. Therefore, this thesis contributes the evaluation of an approach to compensate for changes in illumination and obtain reflectance that is less labour intensive than traditional empirical methods. Convenient field protocols are produced that only require a representative set of illumination and reflectance spectral samples. In addition, a method for determining a line scanning camera's rigid 6 degree of freedom (DOF) offset and uncertainty with respect to a navigation system is developed, enabling accurate georegistration and sensor fusion. The thesis then applies the data captured from the platform to two different agricultural applications. The first is a self-supervised weed detection framework that allows training of a per-pixel classifier using hyperspectral data without manual labelling. The experiments support the effectiveness of the framework, rivalling classifiers trained on hand labelled training data. Then the thesis demonstrates the mapping of mango maturity using hyperspectral data on an orchard wide scale using efficient image scanning techniques, which is a world first result. A novel classification, regression and mapping pipeline is proposed to generate per tree mango maturity averages. The results confirm that maturity prediction in mango orchards is possible in natural daylight using a hyperspectral camera, despite complex micro-illumination-climates under the canopy

Investigating the potential for detecting Oak Decline using Unmanned Aerial Vehicle (UAV) Remote Sensing

This PhD project develops methods for the assessment of forest condition utilising modern remote sensing technologies, in particular optical imagery from unmanned aerial systems and with Structure from Motion photogrammetry. The research focuses on health threats to the UK’s native oak trees, specifically, Chronic Oak Decline (COD) and Acute Oak Decline (AOD). The data requirements and methods to identify these complex diseases are investigatedusing RGB and multispectral imagery with very high spatial resolution, as well as crown textural information. These image data are produced photogrammetrically from multitemporal unmanned aerial vehicle (UAV) flights, collected during different seasons to assess the influence of phenology on the ability to detect oak decline. Particular attention is given to the identification of declined oak health within the context of semi-natural forests and heterogenous stands. Semi-natural forest environments pose challenges regarding naturally occurring variability. The studies investigate the potential and practical implications of UAV remote sensing approaches for detection of oak decline under these conditions. COD is studied at Speculation Cannop, a section in the Forest of Dean, dominated by 200-year-old oaks, where decline symptoms have been present for the last decade. Monks Wood, a semi-natural woodland in Cambridgeshire, is the study site for AOD, where trees exhibit active decline symptoms. Field surveys at these sites are designed and carried out to produce highly-accurate differential GNSS positional information of symptomatic and control oak trees. This allows the UAV data to be related to COD or AOD symptoms and the validation of model predictions. Random Forest modelling is used to determine the explanatory value of remote sensing-derived metrics to distinguish trees affected by COD or AOD from control trees. Spectral and textural variables are extracted from the remote sensing data using an object-based approach, adopting circular plots around crown centres at individual tree level. Furthermore, acquired UAV imagery is applied to generate a species distribution map, improving on the number of detectable species and spatial resolution from a previous classification using multispectral data from a piloted aircraft. In the production of the map, parameters relevant for classification accuracy, and identification of oak in particular, are assessed. The effect of plot size, sample size and data combinations are studied. With optimised parameters for species classification, the updated species map is subsequently employed to perform a wall-to-wall prediction of individual oak tree condition, evaluating the potential of a full inventory detection of declined health. UAV-acquired data showed potential for discrimination of control trees and declined trees, in the case of COD and AOD. The greatest potential for detecting declined oak condition was demonstrated with narrowband multispectral imagery. Broadband RGB imagery was determined to be unsuitable for a robust distinction between declined and control trees. The greatest explanatory power was found in remotely-sensed spectra related to photosynthetic activity, indicated by the high feature importance of nearinfrared spectra and the vegetation indices NDRE and NDVI. High feature importance was also produced by texture metrics, that describe structural variations within the crown. The findings indicate that the remotely sensed explanatory variables hold significant information regarding changes in leaf chemistry and crown morphology that relate to chlorosis, defoliation and dieback occurring in the course of the decline. In the case of COD, a distinction of symptomatic from control trees was achieved with 75 % accuracy. Models developed for AOD detection yielded AUC scores up to 0.98,when validated on independent sample data. Classification of oak presence was achieved with a User’s accuracy of 97 % and the produced species map generated 95 % overall accuracy across the eight species within the study area in the north-east of Monks Wood. Despite these encouraging results, it was shown that the generalisation of models is unfeasible at this stage and many challenges remain. A wall-to-wall prediction of decline status confirmed the inability to generalise, yielding unrealistic results, with a high number of declined trees predicted. Identified weaknesses of the developed models indicate complexity related to the natural variability of heterogenous forests combined with the diverse symptoms of oak decline. Specific to the presented studies, additional limitations were attributed to limited ground truth, consequent overfitting,the binary classification of oak health status and uncertainty in UAV-acquired reflectance values. Suggestions for future work are given and involve the extension of field sampling with a non-binary dependent variable to reflect the severity of oak decline induced stress. Further technical research on the quality and reliability of UAV remote sensing data is also required