18,449 research outputs found
Approximated and User Steerable tSNE for Progressive Visual Analytics
Progressive Visual Analytics aims at improving the interactivity in existing
analytics techniques by means of visualization as well as interaction with
intermediate results. One key method for data analysis is dimensionality
reduction, for example, to produce 2D embeddings that can be visualized and
analyzed efficiently. t-Distributed Stochastic Neighbor Embedding (tSNE) is a
well-suited technique for the visualization of several high-dimensional data.
tSNE can create meaningful intermediate results but suffers from a slow
initialization that constrains its application in Progressive Visual Analytics.
We introduce a controllable tSNE approximation (A-tSNE), which trades off speed
and accuracy, to enable interactive data exploration. We offer real-time
visualization techniques, including a density-based solution and a Magic Lens
to inspect the degree of approximation. With this feedback, the user can decide
on local refinements and steer the approximation level during the analysis. We
demonstrate our technique with several datasets, in a real-world research
scenario and for the real-time analysis of high-dimensional streams to
illustrate its effectiveness for interactive data analysis
Visualizing dimensionality reduction of systems biology data
One of the challenges in analyzing high-dimensional expression data is the
detection of important biological signals. A common approach is to apply a
dimension reduction method, such as principal component analysis. Typically,
after application of such a method the data is projected and visualized in the
new coordinate system, using scatter plots or profile plots. These methods
provide good results if the data have certain properties which become visible
in the new coordinate system and which were hard to detect in the original
coordinate system. Often however, the application of only one method does not
suffice to capture all important signals. Therefore several methods addressing
different aspects of the data need to be applied. We have developed a framework
for linear and non-linear dimension reduction methods within our visual
analytics pipeline SpRay. This includes measures that assist the interpretation
of the factorization result. Different visualizations of these measures can be
combined with functional annotations that support the interpretation of the
results. We show an application to high-resolution time series microarray data
in the antibiotic-producing organism Streptomyces coelicolor as well as to
microarray data measuring expression of cells with normal karyotype and cells
with trisomies of human chromosomes 13 and 21
The vertex-transitive TLF-planar graphs
We consider the class of the topologically locally finite (in short TLF)
planar vertex-transitive graphs, a class containing in particular all the
one-ended planar Cayley graphs and the normal transitive tilings. We
characterize these graphs with a finite local representation and a special kind
of finite state automaton named labeling scheme. As a result, we are able to
enumerate and describe all TLF-planar vertex-transitive graphs of any given
degree. Also, we are able decide to whether any TLF-planar transitive graph is
Cayley or not.Comment: Article : 23 pages, 15 figures Appendix : 13 pages, 72 figures
Submitted to Discrete Mathematics The appendix is accessible at
http://www.labri.fr/~renault/research/research.htm
Measuring relative opinion from location-based social media: A case study of the 2016 U.S. presidential election
Social media has become an emerging alternative to opinion polls for public
opinion collection, while it is still posing many challenges as a passive data
source, such as structurelessness, quantifiability, and representativeness.
Social media data with geotags provide new opportunities to unveil the
geographic locations of users expressing their opinions. This paper aims to
answer two questions: 1) whether quantifiable measurement of public opinion can
be obtained from social media and 2) whether it can produce better or
complementary measures compared to opinion polls. This research proposes a
novel approach to measure the relative opinion of Twitter users towards public
issues in order to accommodate more complex opinion structures and take
advantage of the geography pertaining to the public issues. To ensure that this
new measure is technically feasible, a modeling framework is developed
including building a training dataset by adopting a state-of-the-art approach
and devising a new deep learning method called Opinion-Oriented Word Embedding.
With a case study of the tweets selected for the 2016 U.S. presidential
election, we demonstrate the predictive superiority of our relative opinion
approach and we show how it can aid visual analytics and support opinion
predictions. Although the relative opinion measure is proved to be more robust
compared to polling, our study also suggests that the former can advantageously
complement the later in opinion prediction
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