Learning-based depth and pose prediction for 3D scene reconstruction in endoscopy

Colorectal cancer is the third most common cancer worldwide. Early detection and treatment of pre-cancerous tissue during colonoscopy is critical to improving prognosis. However, navigating within the colon and inspecting the endoluminal tissue comprehensively are challenging, and success in both varies based on the endoscopist's skill and experience. Computer-assisted interventions in colonoscopy show much promise in improving navigation and inspection. For instance, 3D reconstruction of the colon during colonoscopy could promote more thorough examinations and increase adenoma detection rates which are associated with improved survival rates. Given the stakes, this thesis seeks to advance the state of research from feature-based traditional methods closer to a data-driven 3D reconstruction pipeline for colonoscopy. More specifically, this thesis explores different methods that improve subtasks of learning-based 3D reconstruction. The main tasks are depth prediction and camera pose estimation. As training data is unavailable, the author, together with her co-authors, proposes and publishes several synthetic datasets and promotes domain adaptation models to improve applicability to real data. We show, through extensive experiments, that our depth prediction methods produce more robust results than previous work. Our pose estimation network trained on our new synthetic data outperforms self-supervised methods on real sequences. Our box embeddings allow us to interpret the geometric relationship and scale difference between two images of the same surface without the need for feature matches that are often unobtainable in surgical scenes. Together, the methods introduced in this thesis help work towards a complete, data-driven 3D reconstruction pipeline for endoscopy

Enhancing endoscopic navigation and polyp detection using artificial intelligence

Colorectal cancer (CRC) is one most common and deadly forms of cancer. It has a very high mortality rate if the disease advances to late stages however early diagnosis and treatment can be curative is hence essential to enhancing disease management. Colonoscopy is considered the gold standard for CRC screening and early therapeutic treatment. The effectiveness of colonoscopy is highly dependent on the operator’s skill, as a high level of hand-eye coordination is required to control the endoscope and fully examine the colon wall. Because of this, detection rates can vary between different gastroenterologists and technology have been proposed as solutions to assist disease detection and standardise detection rates. This thesis focuses on developing artificial intelligence algorithms to assist gastroenterologists during colonoscopy with the potential to ensure a baseline standard of quality in CRC screening. To achieve such assistance, the technical contributions develop deep learning methods and architectures for automated endoscopic image analysis to address both the detection of lesions in the endoscopic image and the 3D mapping of the endoluminal environment. The proposed detection models can run in real-time and assist visualization of different polyp types. Meanwhile the 3D reconstruction and mapping models developed are the basis for ensuring that the entire colon has been examined appropriately and to support quantitative measurement of polyp sizes using the image during a procedure. Results and validation studies presented within the thesis demonstrate how the developed algorithms perform on both general scenes and on clinical data. The feasibility of clinical translation is demonstrated for all of the models on endoscopic data from human participants during CRC screening examinations

A review on model-based and model-free approaches to control soft actuators and their potentials in colonoscopy

Colorectal cancer (CRC) is the third most common cancer worldwide and responsible for approximately 1 million deaths annually. Early screening is essential to increase the chances of survival, and it can also reduce the cost of treatments for healthcare centres. Colonoscopy is the gold standard for CRC screening and treatment, but it has several drawbacks, including difficulty in manoeuvring the device, patient discomfort, and high cost. Soft endorobots, small and compliant devices thatcan reduce the force exerted on the colonic wall, offer a potential solution to these issues. However, controlling these soft robots is challenging due to their deformable materials and the limitations of mathematical models. In this Review, we discuss model-free and model-based approaches for controlling soft robots that can potentially be applied to endorobots for colonoscopy. We highlight the importance of selecting appropriate control methods based on various parameters, such as sensor and actuator solutions. This review aims to contribute to the development of smart control strategies for soft endorobots that can enhance the effectiveness and safety of robotics in colonoscopy. These strategies can be defined based on the available information about the robot and surrounding environment, control demands, mechanical design impact and characterization data based on calibration.<br/

Current engineering developments for robotic systems in flexible endoscopy

The past four decades have seen an increase in the incidence of early-onset gastrointestinal cancer. Because early-stage cancer detection is vital to reduce mortality rate, mass screening colonoscopy provides the most effective prevention strategy. However, conventional endoscopy is a painful and technically challenging procedure that requires sedation and experienced endoscopists to be performed. To overcome the current limitations, technological innovation is needed in colonoscopy. In recent years, researchers worldwide have worked to enhance the diagnostic and therapeutic capabilities of endoscopes. The new frontier of endoscopic interventions is represented by robotic flexible endoscopy. Among all options, self-propelling soft endoscopes are particularly promising thanks to their dexterity and adaptability to the curvilinear gastrointestinal anatomy. For these devices to replace the standard endoscopes, integration with embedded sensors and advanced surgical navigation technologies must be investigated. In this review, the progress in robotic endoscopy was divided into the fundamental areas of design, sensing, and imaging. The article offers an overview of the most promising advancements on these three topics since 2018. Continuum endoscopes, capsule endoscopes, and add-on endoscopic devices were included, with a focus on fluid-driven, tendon-driven, and magnetic actuation. Sensing methods employed for the shape and force estimation of flexible endoscopes were classified into model- and sensor-based approaches. Finally, some key contributions in molecular imaging technologies, artificial neural networks, and software algorithms are described. Open challenges are discussed to outline a path toward clinical practice for the next generation of endoscopic devices

A Template-Based 3D Reconstruction of Colon Structures and Textures from Stereo Colonoscopic Images

This article presents a framework for 3D reconstruction of colonic surface using stereo colonoscopic images. Due to the limited overlaps between consecutive frames and the nonexistence of large loop closures during a normal screening colonoscopy, the state-of-art simultaneous localization and mapping (SLAM) algorithms cannot be directly applied to this scenario, thus a colon model segmented from CT scans is used together with the colonosocopic images to achieve the colon 3D reconstruction with high accuracy. The proposed framework includes 3D scan (point cloud with RGB information) reconstruction from stereo images, a visual odometry (VO) based camera pose initialization module, a 3D registration scheme for matching texture scans to the segmented colon model, and a barycentric-based texture rendering module for mapping textures from colonoscopic images to the reconstructed colonic surface. A realistic simulator is developed using Unity to simulate the procedures of colonoscopy and used to provide experimental datasets in different scenarios. Experimental results demonstrate the good performance of the proposed 3D colonic surface reconstruction method in terms of accuracy and robustness. Currently, the framework requires a pre-operative colon model as the template for colon reconstruction and can reconstruct 3D colon maps when the colon has no large deformation and the colon structure is clearly visible. The datasets used in this article and the developed simulator are made publicly available for other researchers to use (https://github.com/zsustc/colon_reconstruction_dataset)