Exploring structural properties of kk-trees and block graphs

We present a new characterization of $k$-trees based on their reduced clique graphs and $(k+1)$-line graphs, which are block graphs. We explore structural properties of these two classes, showing that the number of clique-trees of a $k$-tree $G$ equals the number of spanning trees of the $(k+1)$-line graph of $G$. This relationship allows to present a new approach for determining the number of spanning trees of any connected block graph. We show that these results can be accomplished in linear time complexity.Comment: 6 pages, 1 figur

Unique Perfect Phylogeny Characterizations via Uniquely Representable Chordal Graphs

The perfect phylogeny problem is a classic problem in computational biology, where we seek an unrooted phylogeny that is compatible with a set of qualitative characters. Such a tree exists precisely when an intersection graph associated with the character set, called the partition intersection graph, can be triangulated using a restricted set of fill edges. Semple and Steel used the partition intersection graph to characterize when a character set has a unique perfect phylogeny. Bordewich, Huber, and Semple showed how to use the partition intersection graph to find a maximum compatible set of characters. In this paper, we build on these results, characterizing when a unique perfect phylogeny exists for a subset of partial characters. Our characterization is stated in terms of minimal triangulations of the partition intersection graph that are uniquely representable, also known as ur-chordal graphs. Our characterization is motivated by the structure of ur-chordal graphs, and the fact that the block structure of minimal triangulations is mirrored in the graph that has been triangulated

Two methods for the generation of chordal graphs

In this paper two methods for automatic generation of connected chordal graphs are proposed: the first one is based on results concerning the dynamic maintainance of chordality under edge insertions; the second is based on expansion/merging of maximal cliques. In both methods, chordality is preserved along the whole generation process

Determining what sets of trees can be the clique trees of a chordal graph

Chordal graphs have characteristic tree representations, the clique trees. The problems of finding one or enumerating them have already been solved in a satisfactory way. In this paper, the following related problem is studied: given a family T of trees, all having the same vertex set V, determine whether there exists a chordal graph whose set of clique trees equals T. For that purpose, we undertake a study of the structural properties, some already known and some new, of the clique trees of a chordal graph and the characteristics of the sets that induce subtrees of every clique tree. Some necessary and sufficient conditions and examples of how they can be applied are found, eventually establishing that a positive or negative answer to the problem can be obtained in polynomial time. If affirmative, a graph whose set of clique trees equals T is also obtained. Finally, all the chordal graphs with set of clique trees equal to T are characterized.Facultad de Ciencias Exacta

Determining what sets of trees can be the clique trees of a chordal graph

Chordal graphs have characteristic tree representations, the clique trees. The problems of finding one or enumerating them have already been solved in a satisfactory way. In this paper, the following related problem is studied: given a family T of trees, all having the same vertex set V, determine whether there exists a chordal graph whose set of clique trees equals T. For that purpose, we undertake a study of the structural properties, some already known and some new, of the clique trees of a chordal graph and the characteristics of the sets that induce subtrees of every clique tree. Some necessary and sufficient conditions and examples of how they can be applied are found, eventually establishing that a positive or negative answer to the problem can be obtained in polynomial time. If affirmative, a graph whose set of clique trees equals T is also obtained. Finally, all the chordal graphs with set of clique trees equal to T are characterized.Facultad de Ciencias Exacta