1,124 research outputs found
Petri nets for systems and synthetic biology
We give a description of a Petri net-based framework for
modelling and analysing biochemical pathways, which uni¯es the qualita-
tive, stochastic and continuous paradigms. Each perspective adds its con-
tribution to the understanding of the system, thus the three approaches
do not compete, but complement each other. We illustrate our approach
by applying it to an extended model of the three stage cascade, which
forms the core of the ERK signal transduction pathway. Consequently
our focus is on transient behaviour analysis. We demonstrate how quali-
tative descriptions are abstractions over stochastic or continuous descrip-
tions, and show that the stochastic and continuous models approximate
each other. Although our framework is based on Petri nets, it can be
applied more widely to other formalisms which are used to model and
analyse biochemical networks
Synthesis and Optimization of Reversible Circuits - A Survey
Reversible logic circuits have been historically motivated by theoretical
research in low-power electronics as well as practical improvement of
bit-manipulation transforms in cryptography and computer graphics. Recently,
reversible circuits have attracted interest as components of quantum
algorithms, as well as in photonic and nano-computing technologies where some
switching devices offer no signal gain. Research in generating reversible logic
distinguishes between circuit synthesis, post-synthesis optimization, and
technology mapping. In this survey, we review algorithmic paradigms ---
search-based, cycle-based, transformation-based, and BDD-based --- as well as
specific algorithms for reversible synthesis, both exact and heuristic. We
conclude the survey by outlining key open challenges in synthesis of reversible
and quantum logic, as well as most common misconceptions.Comment: 34 pages, 15 figures, 2 table
Classical computing, quantum computing, and Shor's factoring algorithm
This is an expository talk written for the Bourbaki Seminar. After a brief
introduction, Section 1 discusses in the categorical language the structure of
the classical deterministic computations. Basic notions of complexity icluding
the P/NP problem are reviewed. Section 2 introduces the notion of quantum
parallelism and explains the main issues of quantum computing. Section 3 is
devoted to four quantum subroutines: initialization, quantum computing of
classical Boolean functions, quantum Fourier transform, and Grover's search
algorithm. The central Section 4 explains Shor's factoring algorithm. Section 5
relates Kolmogorov's complexity to the spectral properties of computable
function. Appendix contributes to the prehistory of quantum computing.Comment: 27 pp., no figures, amste
Reversible Computation: Extending Horizons of Computing
This open access State-of-the-Art Survey presents the main recent scientific outcomes in the area of reversible computation, focusing on those that have emerged during COST Action IC1405 "Reversible Computation - Extending Horizons of Computing", a European research network that operated from May 2015 to April 2019. Reversible computation is a new paradigm that extends the traditional forwards-only mode of computation with the ability to execute in reverse, so that computation can run backwards as easily and naturally as forwards. It aims to deliver novel computing devices and software, and to enhance existing systems by equipping them with reversibility. There are many potential applications of reversible computation, including languages and software tools for reliable and recovery-oriented distributed systems and revolutionary reversible logic gates and circuits, but they can only be realized and have lasting effect if conceptual and firm theoretical foundations are established first
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