676 research outputs found
Abstract State Machines 1988-1998: Commented ASM Bibliography
An annotated bibliography of papers which deal with or use Abstract State
Machines (ASMs), as of January 1998.Comment: Also maintained as a BibTeX file at http://www.eecs.umich.edu/gasm
On the possible Computational Power of the Human Mind
The aim of this paper is to address the question: Can an artificial neural
network (ANN) model be used as a possible characterization of the power of the
human mind? We will discuss what might be the relationship between such a model
and its natural counterpart. A possible characterization of the different power
capabilities of the mind is suggested in terms of the information contained (in
its computational complexity) or achievable by it. Such characterization takes
advantage of recent results based on natural neural networks (NNN) and the
computational power of arbitrary artificial neural networks (ANN). The possible
acceptance of neural networks as the model of the human mind's operation makes
the aforementioned quite relevant.Comment: Complexity, Science and Society Conference, 2005, University of
Liverpool, UK. 23 page
The Tandem Duplication Distance Is NP-Hard
In computational biology, tandem duplication is an important biological phenomenon which can occur either at the genome or at the DNA level. A tandem duplication takes a copy of a genome segment and inserts it right after the segment - this can be represented as the string operation AXB ? AXXB. Tandem exon duplications have been found in many species such as human, fly or worm, and have been largely studied in computational biology.
The Tandem Duplication (TD) distance problem we investigate in this paper is defined as follows: given two strings S and T over the same alphabet, compute the smallest sequence of tandem duplications required to convert S to T. The natural question of whether the TD distance can be computed in polynomial time was posed in 2004 by Leupold et al. and had remained open, despite the fact that tandem duplications have received much attention ever since. In this paper, we prove that this problem is NP-hard, settling the 16-year old open problem. We further show that this hardness holds even if all characters of S are distinct. This is known as the exemplar TD distance, which is of special relevance in bioinformatics. One of the tools we develop for the reduction is a new problem called the Cost-Effective Subgraph, for which we obtain W[1]-hardness results that might be of independent interest. We finally show that computing the exemplar TD distance between S and T is fixed-parameter tractable. Our results open the door to many other questions, and we conclude with several open problems
Lower Bounds on Quantum Query Complexity
Shor's and Grover's famous quantum algorithms for factoring and searching
show that quantum computers can solve certain computational problems
significantly faster than any classical computer. We discuss here what quantum
computers_cannot_ do, and specifically how to prove limits on their
computational power. We cover the main known techniques for proving lower
bounds, and exemplify and compare the methods.Comment: survey, 23 page
Subtyping for Hierarchical, Reconfigurable Petri Nets
Hierarchical Petri nets allow a more abstract view and reconfigurable Petri
nets model dynamic structural adaptation. In this contribution we present the
combination of reconfigurable Petri nets and hierarchical Petri nets yielding
hierarchical structure for reconfigurable Petri nets. Hierarchies are
established by substituting transitions by subnets. These subnets are
themselves reconfigurable, so they are supplied with their own set of rules.
Moreover, global rules that can be applied in all of the net, are provided
- …