A bioinformatics potpourri

© 2018 The Author(s). The 16th International Conference on Bioinformatics (InCoB) was held at Tsinghua University, Shenzhen from September 20 to 22, 2017. The annual conference of the Asia-Pacific Bioinformatics Network featured six keynotes, two invited talks, a panel discussion on big data driven bioinformatics and precision medicine, and 66 oral presentations of accepted research articles or posters. Fifty-seven articles comprising a topic assortment of algorithms, biomolecular networks, cancer and disease informatics, drug-target interactions and drug efficacy, gene regulation and expression, imaging, immunoinformatics, metagenomics, next generation sequencing for genomics and transcriptomics, ontologies, post-translational modification, and structural bioinformatics are the subject of this editorial for the InCoB2017 supplement issues in BMC Genomics, BMC Bioinformatics, BMC Systems Biology and BMC Medical Genomics. New Delhi will be the location of InCoB2018, scheduled for September 26-28, 2018

The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics and outcomes

Romano P, Hofestädt R, Lange M, D'Elia D. The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics and outcomes. BMC BIOINFORMATICS. 2017;18(S5): 101.The 15th International NETTAB workshop and the 11th Integrative Bioinformatics Symposium were held together in Bari, on October 14-16, 2016, as Joint NETTAB/IB 2015 Meeting. A special topic for the meeting was "Bioinformatics for ncRNA", but the traditional topics of both meetings series were also included in the event. About 60 scientific contributions were presented, including six keynote lectures, one special guest lecture, and many oral communications and posters. A " Two-Day Hands-on Tutorial" event was organised before the workshop. Selected full papers from some of the best works presented in Bari were submitted either to the Journal of Integrative Bioinformatics or to a purpose Call for a Supplement of BMC Bioinformatics. Here, we provide an overview of meeting aims and scope. We also shortly introduce selected papers that have been either accepted for publication in this Supplement or published in the Journal of Integrative Bioinformatics, for a more complete presentation of the outcomes of the meeting

Guest Editors\u27 Introduction

This Supplement includes a selection of papers presented at the 7th International Symposium on Bioinformatics Research and Application (ISBRA), which was held on May 27-29, 2011 at Central South University in Changsha, China. The technical program of the symposium included 36 extended abstracts presented orally and published in volume 6674 of Springer Verlag’s Lecture Notes in Bioinformatics series. Additionally, the program included 38 short abstracts presented either orally or as posters. Authors of both extended and short abstracts presented at the symposium were invited to submit full versions of their work to this Supplement. Following a rigorous review process, 19 of the 40 full papers submitted were selected for publication. Selected papers cover a broad range of bioinformatics topics, ranging from algorithms for structural biology to phylogenetics and biological networks

NETTAB 2012 on “Integrated Bio-Search”

The NETTAB 2012 workshop, held in Como on November 14-16, 2012, was devoted to "Integrated Bio-Search", that is to technologies, methods, architectures, systems and applications for searching, retrieving, integrating and analyzing data, information, and knowledge with the aim of answering complex bio-medical-molecular questions, i.e. some of the most challenging issues in bioinformatics today. It brought together about 80 researchers working in the field of Bioinformatics, Computational Biology, Biology, Computer Science and Engineering. More than 50 scientific contributions, including keynote and tutorial talks, oral communications, posters and software demonstrations, were presented at the workshop. This preface provides a brief overview of the workshop and shortly introduces the peer-reviewed manuscripts that were accepted for publication in this Supplement

BOSC 2019, the 20th annual Bioinformatics Open Source Conference.

The Bioinformatics Open Source Conference is a volunteer-organized meeting that covers open source software development and open science in bioinformatics. Launched in 2000, BOSC has been held every year since. BOSC 2019, the 20th annual BOSC, took place as one of the Communities of Special Interest (COSIs) at the Intelligent Systems for Molecular Biology meeting (ISMB/ECCB 2019). The two-day meeting included a total of 46 talks and 55 posters, as well as eight Birds of a Feather interest groups. The keynote speaker was University of Cape Town professor Dr. Nicola Mulder, who spoke on "Building infrastructure for responsible open science in Africa". Immediately after BOSC 2019, about 50 people participated in the two-day CollaborationFest (CoFest for short), an open and free community-driven event at which participants work together to contribute to bioinformatics software, documentation, training materials, and use cases

Bioinformatics Education—Perspectives and Challenges

This article discusses the evolution of curriculum, instructional methodologies and initiatives supporting the dissemination of bioinformatics. Building on the early applications of informatics to the field of biology, bioinformatics research entails input from the diverse disciplines of mathematics and statistics, physics and chemistry and medicine and pharmacology. Training in bioinformatics remains the oldest and most important rapid introduction approach to learning bioinformatics skills.2 page(s

Book of Abstracts - XIII EUCARPIA Biometrics in Plant Breeding Section Meeting - 30 August - 1 September 2006 - Zagreb, Croatia

The Book of Abstracts of the XIII EUCARPIA Biometrics in Plant Breeding Section Meeting held in 2006 in Zagreb, Croatia, contains the abstracts of 40 oral presentations and 22 posters as presented during six sessions: Linkage and LD based QTL Mapping Methodology I and II, Computer Science, Bioinformatics and Analysis of Large Data Sets, Crop Growth Modelling / Modelling GxE, and Collaborative Breeding. All the abstracts have been thoroughly reviewed by the members of Scientific Committee

Codon usage analysis of prokaryotic mechanosensation genes

[Abstract]: In the present study, we examined GC nucleotide composition, relative synonymous codon usage (RSCU), effective number of codons (ENC), codon adaptation index (CAI) and gene length for 308 prokaryotic mechanosensitive ion channel (MSC) genes from six evolutionary groups: Euryarchaeota, Actinobacteria, Alphaproteobacteria, Betaproteobacteria, Firmicutes, and Gammaproteobacteria. Results showed that 1). a wide variation of overrepresentation of nucleotides exists in the MSC genes; 2). codon usage bias varies considerably among the MSC genes; 3). both nucleotide constraint and gene length play an important role in shaping codon usage of the bacterial MSC genes and 4). synonymous codon usage of prokaryotic MSC genes is phylogenetically conserved. Knowledge of codon usage in prokaryotic MSC genes may benefit for the study of the MSC genes in eukaryotes in which few MSC genes have been identified and functionally analysed

Three novel science activities relating to the structure of the atom, bioinformatics, and the denaturation of protein

Plan B Paper. 2013. Master of Science in Education- Physics--University of Wisconsin-River Falls. Physics Department. 30 leaves. Includes bibliographical references (leaf 10).This paper describes three novel activities that were designed to teach difficult scientific concepts to a wide age range of students (7th through 11th grade). The subject of the three activities include the structure of the atom, bioinformatics, and protein denaturation. Each section within the paper includes background information and material lists necessary for the activity, in addition to a procedure and reflection. The two models of learning used to analyze the activities were Bloom's Taxonomy and the Constructivist Theory. In Bloom's Taxonomy, there are six levels in the Cognitive domain: Knowledge, Comprehension, Application, Analysis, Synthesis, and Evaluation (in order from lowest to highest). As a student progresses from the lower levels to the higher levels, their comprehension and mastery of the subject increases. According to Constructivism, a learner needs to be active in the learning process so that they can give meaning to their experiences. This happens when the learner reconciles their experiences to something they previously held to be true