Biconnectivity, Chain Decomposition and st-Numbering Using O(n) Bits

Recent work by Elmasry et al. (STACS 2015) and Asano et al. (ISAAC 2014) reconsidered classical fundamental graph algorithms focusing on improving the space complexity. Elmasry et al. gave, among others, an implementation of depth first search (DFS) of a graph on n vertices and m edges, taking O(m lg lg n) time using O(n) bits of space improving on the time bound of O(m lg n) due to Asano et al. Subsequently Banerjee et al. (COCOON 2016) gave an O(m + n) time implementation using O(m+n) bits, for DFS and its classical applications (including testing for biconnectivity, and finding cut vertices and cut edges). Recently, Kammer et al. (MFCS 2016) gave an algorithm for testing biconnectivity using O(n + min{m, n lg lg n}) bits in linear time. In this paper, we consider O(n) bits implementations of the classical applications of DFS. These include the problem of finding cut vertices, and biconnected components, chain decomposition and st-numbering. Classical algorithms for them typically use DFS and some Omega(lg n) bits of information at each node. Our O(n)-bit implementations for these problems take O(m lg^c n lg lg n) time for some small constant c (c leq 3). Central to our implementation is a succinct representation of the DFS tree and a space efficient partitioning of the DFS tree into connected subtrees, which maybe of independent interest for space efficient graph algorithms

Indexing Graph Search Trees and Applications

We consider the problem of compactly representing the Depth First Search (DFS) tree of a given undirected or directed graph having n vertices and m edges while supporting various DFS related queries efficiently in the RAM with logarithmic word size. We study this problem in two well-known models: indexing and encoding models. While most of these queries can be supported easily in constant time using O(n lg n) bits of extra space, our goal here is, more specifically, to beat this trivial O(n lg n) bit space bound, yet not compromise too much on the running time of these queries. In the indexing model, the space bound of our solution involves the quantity m, hence, we obtain different bounds for sparse and dense graphs respectively. In the encoding model, we first give a space lower bound, followed by an almost optimal data structure with extremely fast query time. Central to our algorithm is a partitioning of the DFS tree into connected subtrees, and a compact way to store these connections. Finally, we also apply these techniques to compactly index the shortest path structure, biconnectivity structures among others

A Framework for In-place Graph Algorithms

Read-only memory (ROM) model is a classical model of computation to study time-space tradeoffs of algorithms. A classical result on the ROM model is that any algorithm to sort n numbers using O(s) words of extra space requires Omega (n^2/s) comparisons for lg n <= s <= n/lg n and the bound has also been recently matched by an algorithm. However, if we relax the model, we do have sorting algorithms (say Heapsort) that can sort using O(n lg n) comparisons using O(lg n) bits of extra space, even keeping a permutation of the given input sequence at anytime during the algorithm. We address similar relaxations for graph algorithms. We show that a simple natural relaxation of ROM model allows us to implement fundamental graph search methods like BFS and DFS more space efficiently than in ROM. By simply allowing elements in the adjacency list of a vertex to be permuted, we show that, on an undirected or directed connected graph G having n vertices and m edges, the vertices of G can be output in a DFS or BFS order using O(lg n) bits of extra space and O(n^3 lg n) time. Thus we obtain similar bounds for reachability and shortest path distance (both for undirected and directed graphs). With a little more (but still polynomial) time, we can also output vertices in the lex-DFS order. As reachability in directed graphs (even in DAGs) and shortest path distance (even in undirected graphs) are NL-complete, and lex-DFS is P-complete, our results show that our model is more powerful than ROM if L != P. En route, we also introduce and develop algorithms for another relaxation of ROM where the adjacency lists of the vertices are circular lists and we can modify only the heads of the lists. Here we first show a linear time DFS implementation using n + O(lg n) bits of extra space. Improving the extra space exponentially to only O(lg n) bits, we also obtain BFS and DFS albeit with a slightly slower running time. Both the models we propose maintain the graph structure throughout the algorithm, only the order of vertices in the adjacency list changes. In sharp contrast, for BFS and DFS, to the best of our knowledge, there are no algorithms in ROM that use even O(n^{1-epsilon}) bits of extra space; in fact, implementing DFS using cn bits for c<1 has been mentioned as an open problem. Furthermore, DFS (BFS, respectively) algorithms using n+o(n) (o(n), respectively) bits of extra use Reingold\u27s [JACM, 2008] or Barnes et al\u27s reachability algorithm [SICOMP, 1998] and hence have high runtime. Our results can be contrasted with the recent result of Buhrman et al. [STOC, 2014] which gives an algorithm for directed st-reachability on catalytic Turing machines using O(lg n) bits with catalytic space O(n^2 lg n) and time O(n^9)

Theoretically Efficient Parallel Graph Algorithms Can Be Fast and Scalable

There has been significant recent interest in parallel graph processing due to the need to quickly analyze the large graphs available today. Many graph codes have been designed for distributed memory or external memory. However, today even the largest publicly-available real-world graph (the Hyperlink Web graph with over 3.5 billion vertices and 128 billion edges) can fit in the memory of a single commodity multicore server. Nevertheless, most experimental work in the literature report results on much smaller graphs, and the ones for the Hyperlink graph use distributed or external memory. Therefore, it is natural to ask whether we can efficiently solve a broad class of graph problems on this graph in memory. This paper shows that theoretically-efficient parallel graph algorithms can scale to the largest publicly-available graphs using a single machine with a terabyte of RAM, processing them in minutes. We give implementations of theoretically-efficient parallel algorithms for 20 important graph problems. We also present the optimizations and techniques that we used in our implementations, which were crucial in enabling us to process these large graphs quickly. We show that the running times of our implementations outperform existing state-of-the-art implementations on the largest real-world graphs. For many of the problems that we consider, this is the first time they have been solved on graphs at this scale. We have made the implementations developed in this work publicly-available as the Graph-Based Benchmark Suite (GBBS).Comment: This is the full version of the paper appearing in the ACM Symposium on Parallelism in Algorithms and Architectures (SPAA), 201

Space-Efficient DFS and Applications: Simpler, Leaner, Faster

The problem of space-efficient depth-first search (DFS) is reconsidered. A particularly simple and fast algorithm is presented that, on a directed or undirected input graph $G=(V,E)$ with $n$ vertices and $m$ edges, carries out a DFS in $O(n+m)$ time with $n+\sum_{v\in V_{\ge 3}}\lceil{\log_2(d_v-1)}\rceil +O(\log n)\le n+m+O(\log n)$ bits of working memory, where $d_v$ is the (total) degree of $v$, for each $v\in V$, and $V_{\ge 3}=\{v\in V\mid d_v\ge 3\}$. A slightly more complicated variant of the algorithm works in the same time with at most $n+({4/5})m+O(\log n)$ bits. It is also shown that a DFS can be carried out in a graph with $n$ vertices and $m$ edges in $O(n+m\log^*\! n)$ time with $O(n)$ bits or in $O(n+m)$ time with either $O(n\log\log(4+{m/n}))$ bits or, for arbitrary integer $k\ge 1$, $O(n\log^{(k)}\! n)$ bits. These results among them subsume or improve most earlier results on space-efficient DFS. Some of the new time and space bounds are shown to extend to applications of DFS such as the computation of cut vertices, bridges, biconnected components and 2-edge-connected components in undirected graphs