Split-and-merge Procedure for Image Segmentation using Bimodality Detection Approach

Image segmentation, the division of a multi-dimensional image into groups of associated pixels, is an essential step for many advanced imaging applications. Image segmentation can be performed by recursively splitting the whole image or by merging together a large number of minute regions until a specified condition is satisfied. The split-and-merge procedure of image segmentation takes an  intermediate level in an image description as the starting cutest, and thereby achieves a compromise between merging small primitive regions and recursively splitting the whole images to reach the desired final cutest. The proposed segmentation approach is a split-andmerge technique. The conventional split-and-merge algorithm is lacking in adaptability to the image semantics because of its stiff quadtree-based structure. In this paper, an automatic thresholding technique based on bimodality detection approach with non-homogeneity criterion is employed in the splitting phase of the split-and-merge segmentation scheme to directly reflect the image semantics to the image segmentation results. Since the proposed splitting technique depends upon homogeneity factor, some of the split regions may or may not split properly. There should be rechecking through merging technique between the two adjacent regions to overcome the drawback of the splitting technique. A sequential-arrange-based or a minimal spanning-tree based approach, that depends on data dimensionality of the weighted centroids of all split regions for finding the pair wise adjacent regions, is introduced. Finally, to overcome the problems caused by the splitting technique, a novel merging technique based on the density ratio of the adjacent pair regions is proposed. The algorithm has been tested on several synthetic as well as real life data and the results show the efficiency of the segmentation technique.Defence Science Journal, 2010, 60(3), pp.290-301, DOI:http://dx.doi.org/10.14429/dsj.60.35

A highly accurate level set approach for segmenting green microalgae images

We present a method for segmenting 2D microscopy images of freshwater green microalgae. Our approach is based on a specialized level set method, leading to efficient and highly accurate algae segmentation. The level set formulation of our problem allows us to generate an algae’s boundary curve as the result of an evolving level curve, based on computed background and algae regions in a given image. By characterizing the distributions of image intensity values in local regions, we are able to automatically classify image regions into background and algae regions. We present results obtained with our method. These results are very promising as they document that we can achieve highly accurate algae segmentations when comparing ours against manually segmented images (segmented by an expert biologist) and with results derived by other approaches covered in the literature.State of Sao Paulo Research Funding Agency (FAPESP) (procs. 2011/22749-8, 2012/00269-7, 2013/26647-0)Brazilian Federal Funding Agency (CNPq) (proc. 305696/2013-0

Imaging-in-flow: digital holographic microscopy as a novel tool to detect and classify nanoplanktonic organisms

Traditional taxonomic identification of planktonic organisms is based on light microscopy, which is both time-consuming and tedious. In response, novel ways of automated (machine) identification, such as flow cytometry, have been investigated over the last two decades. To improve the taxonomic resolution of particle analysis, recent developments have focused on "imaging-in-flow," i.e., the ability to acquire microscopic images of planktonic cells in a flow-through mode. Imaging-in-flow systems are traditionally based on classical brightfield microscopy and are faced with a number of issues that decrease the classification performance and accuracy (e. g., projection variance of cells, migration of cells out of the focus plane). Here, we demonstrate that a combination of digital holographic microscopy (DHM) with imaging-in-flow can improve the detection and classification of planktonic organisms. In addition to light intensity information, DHM provides quantitative phase information, which generates an additional and independent set of features that can be used in classification algorithms. Moreover, the capability of digitally refocusing greatly increases the depth of field, enables a more accurate focusing of cells, and reduces the effects of position variance. Nanoplanktonic organisms similar in shape were successfully classified from images captured with an off-axis DHM with partial coherence. Textural features based on DHM phase information proved more efficient in separating the three tested phytoplankton species compared with shape-based features or textural features based on light intensity. An overall classification score of 92.4% demonstrates the potential of holographic-based imaging-in-flow for similar looking organisms in the nanoplankton range