Landmark detection in 2D bioimages for geometric morphometrics: a multi-resolution tree-based approach

The detection of anatomical landmarks in bioimages is a necessary but tedious step for geometric morphometrics studies in many research domains. We propose variants of a multi-resolution tree-based approach to speed-up the detection of landmarks in bioimages. We extensively evaluate our method variants on three different datasets (cephalometric, zebrafish, and drosophila images). We identify the key method parameters (notably the multi-resolution) and report results with respect to human ground truths and existing methods. Our method achieves recognition performances competitive with current existing approaches while being generic and fast. The algorithms are integrated in the open-source Cytomine software and we provide parameter configuration guidelines so that they can be easily exploited by end-users. Finally, datasets are readily available through a Cytomine server to foster future research

Enhancing Automatic Annotation for Optimal Image Retrieval

Image search and retrieval based on content is very cumbersome task particularly when the image database is large. The accuracy of the retrieval as well as the processing speed are two important measures used for assessing and comparing the effectiveness of various systems. Text retrieval is more mature and advanced than image content retrieval. In this dissertation, the focus is on converting image content into text tags that can be easily searched using standard search engines where the size and speed issues of the database have been already dealt with. Therefore, image tagging becomes an essential tool for image retrieval from large image databases. Automation of image tagging has received considerable attention by many researchers in recent years. The optimal goal of image description is to automatically annotate images with tags that semantically represent the image content. The speed and accuracy of Image retrieval from large databases are few of the important domains that can benefit from automatic tagging. In this work, several state of the art image classification and image tagging techniques are reviewed. We propose a new self-learning multilayered tagging framework that can address the limitations of current approaches and provide mutual accuracy improvement between the recognition layer and the annotation layer. Our results indicate that the proposed framework can improve the overall accuracy of information retrieval in a variety of image databases

The feasibility of using feature-flow and label transfer system to segment medical images with deformed anatomy in orthopedic surgery

In computer-aided surgical systems, to obtain high fidelity three-dimensional models, we require accurate segmentation of medical images. State-of-art medical image segmentation methods have been used successfully in particular applications, but they have not been demonstrated to work well over a wide range of deformities. For this purpose, I studied and evaluated medical image segmentation using the feature-flow based Label Transfer System described by Liu and colleagues. This system has produced promising results in parsing images of natural scenes. Its ability to deal with variations in shapes of objects is desirable. In this paper, we altered this system and assessed its feasibility of automatic segmentation. Experiments showed that this system achieved better recognition rates than those in natural-scene parsing applications, but the high recognition rates were not consistent across different images. Although this system is not considered clinically practical, we may improve it and incorporate it with other medical segmentation tools

Medical Image Modality Classification using Feature Weighted Clustering Approach.

Sistem Dapat Semula Imej Perubatan merupakan satu bidang yang amat penting bagi pembekal penjagaan kesihatan. Medical Image Retrieval System is an area of great importance to the healthcare providers