Multiscale approach for the network compression-friendly ordering

We present a fast multiscale approach for the network minimum logarithmic arrangement problem. This type of arrangement plays an important role in a network compression and fast node/link access operations. The algorithm is of linear complexity and exhibits good scalability which makes it practical and attractive for using on large-scale instances. Its effectiveness is demonstrated on a large set of real-life networks. These networks with corresponding best-known minimization results are suggested as an open benchmark for a research community to evaluate new methods for this problem

Vertex Sparsifiers: New Results from Old Techniques

Given a capacitated graph $G = (V,E)$ and a set of terminals $K \subseteq V$, how should we produce a graph $H$ only on the terminals $K$ so that every (multicommodity) flow between the terminals in $G$ could be supported in $H$ with low congestion, and vice versa? (Such a graph $H$ is called a flow-sparsifier for $G$.) What if we want $H$ to be a "simple" graph? What if we allow $H$ to be a convex combination of simple graphs? Improving on results of Moitra [FOCS 2009] and Leighton and Moitra [STOC 2010], we give efficient algorithms for constructing: (a) a flow-sparsifier $H$ that maintains congestion up to a factor of $O(\log k/\log \log k)$, where $k = |K|$, (b) a convex combination of trees over the terminals $K$ that maintains congestion up to a factor of $O(\log k)$, and (c) for a planar graph $G$, a convex combination of planar graphs that maintains congestion up to a constant factor. This requires us to give a new algorithm for the 0-extension problem, the first one in which the preimages of each terminal are connected in $G$. Moreover, this result extends to minor-closed families of graphs. Our improved bounds immediately imply improved approximation guarantees for several terminal-based cut and ordering problems.Comment: An extended abstract appears in the 13th International Workshop on Approximation Algorithms for Combinatorial Optimization Problems (APPROX), 2010. Final version to appear in SIAM J. Computin

RRR: Rank-Regret Representative

Selecting the best items in a dataset is a common task in data exploration. However, the concept of "best" lies in the eyes of the beholder: different users may consider different attributes more important, and hence arrive at different rankings. Nevertheless, one can remove "dominated" items and create a "representative" subset of the data set, comprising the "best items" in it. A Pareto-optimal representative is guaranteed to contain the best item of each possible ranking, but it can be almost as big as the full data. Representative can be found if we relax the requirement to include the best item for every possible user, and instead just limit the users' "regret". Existing work defines regret as the loss in score by limiting consideration to the representative instead of the full data set, for any chosen ranking function. However, the score is often not a meaningful number and users may not understand its absolute value. Sometimes small ranges in score can include large fractions of the data set. In contrast, users do understand the notion of rank ordering. Therefore, alternatively, we consider the position of the items in the ranked list for defining the regret and propose the {\em rank-regret representative} as the minimal subset of the data containing at least one of the top-$k$ of any possible ranking function. This problem is NP-complete. We use the geometric interpretation of items to bound their ranks on ranges of functions and to utilize combinatorial geometry notions for developing effective and efficient approximation algorithms for the problem. Experiments on real datasets demonstrate that we can efficiently find small subsets with small rank-regrets

Minimum d-dimensional arrangement with fixed points

In the Minimum $d$-Dimensional Arrangement Problem (d-dimAP) we are given a graph with edge weights, and the goal is to find a 1-1 map of the vertices into $\mathbb{Z}^d$ (for some fixed dimension $d\geq 1$) minimizing the total weighted stretch of the edges. This problem arises in VLSI placement and chip design. Motivated by these applications, we consider a generalization of d-dimAP, where the positions of some of the vertices (pins) is fixed and specified as part of the input. We are asked to extend this partial map to a map of all the vertices, again minimizing the weighted stretch of edges. This generalization, which we refer to as d-dimAP+, arises naturally in these application domains (since it can capture blocked-off parts of the board, or the requirement of power-carrying pins to be in certain locations, etc.). Perhaps surprisingly, very little is known about this problem from an approximation viewpoint. For dimension $d=2$, we obtain an $O(k^{1/2} \cdot \log n)$-approximation algorithm, based on a strengthening of the spreading-metric LP for 2-dimAP. The integrality gap for this LP is shown to be $\Omega(k^{1/4})$. We also show that it is NP-hard to approximate 2-dimAP+ within a factor better than \Omega(k^{1/4-\eps}). We also consider a (conceptually harder, but practically even more interesting) variant of 2-dimAP+, where the target space is the grid $\mathbb{Z}_{\sqrt{n}} \times \mathbb{Z}_{\sqrt{n}}$, instead of the entire integer lattice $\mathbb{Z}^2$. For this problem, we obtain a $O(k \cdot \log^2{n})$-approximation using the same LP relaxation. We complement this upper bound by showing an integrality gap of $\Omega(k^{1/2})$, and an \Omega(k^{1/2-\eps})-inapproximability result. Our results naturally extend to the case of arbitrary fixed target dimension $d\geq 1$

The Geometry of Scheduling

We consider the following general scheduling problem: The input consists of n jobs, each with an arbitrary release time, size, and a monotone function specifying the cost incurred when the job is completed at a particular time. The objective is to find a preemptive schedule of minimum aggregate cost. This problem formulation is general enough to include many natural scheduling objectives, such as weighted flow, weighted tardiness, and sum of flow squared. Our main result is a randomized polynomial-time algorithm with an approximation ratio O(log log nP), where P is the maximum job size. We also give an O(1) approximation in the special case when all jobs have identical release times. The main idea is to reduce this scheduling problem to a particular geometric set-cover problem which is then solved using the local ratio technique and Varadarajan's quasi-uniform sampling technique. This general algorithmic approach improves the best known approximation ratios by at least an exponential factor (and much more in some cases) for essentially all of the nontrivial common special cases of this problem. Our geometric interpretation of scheduling may be of independent interest.Comment: Conference version in FOCS 201

Convex Relaxations for Permutation Problems

Seriation seeks to reconstruct a linear order between variables using unsorted, pairwise similarity information. It has direct applications in archeology and shotgun gene sequencing for example. We write seriation as an optimization problem by proving the equivalence between the seriation and combinatorial 2-SUM problems on similarity matrices (2-SUM is a quadratic minimization problem over permutations). The seriation problem can be solved exactly by a spectral algorithm in the noiseless case and we derive several convex relaxations for 2-SUM to improve the robustness of seriation solutions in noisy settings. These convex relaxations also allow us to impose structural constraints on the solution, hence solve semi-supervised seriation problems. We derive new approximation bounds for some of these relaxations and present numerical experiments on archeological data, Markov chains and DNA assembly from shotgun gene sequencing data.Comment: Final journal version, a few typos and references fixe