Minimum d-dimensional arrangement with fixed points

In the Minimum $d$-Dimensional Arrangement Problem (d-dimAP) we are given a graph with edge weights, and the goal is to find a 1-1 map of the vertices into $\mathbb{Z}^d$ (for some fixed dimension $d\geq 1$) minimizing the total weighted stretch of the edges. This problem arises in VLSI placement and chip design. Motivated by these applications, we consider a generalization of d-dimAP, where the positions of some of the vertices (pins) is fixed and specified as part of the input. We are asked to extend this partial map to a map of all the vertices, again minimizing the weighted stretch of edges. This generalization, which we refer to as d-dimAP+, arises naturally in these application domains (since it can capture blocked-off parts of the board, or the requirement of power-carrying pins to be in certain locations, etc.). Perhaps surprisingly, very little is known about this problem from an approximation viewpoint. For dimension $d=2$, we obtain an $O(k^{1/2} \cdot \log n)$-approximation algorithm, based on a strengthening of the spreading-metric LP for 2-dimAP. The integrality gap for this LP is shown to be $\Omega(k^{1/4})$. We also show that it is NP-hard to approximate 2-dimAP+ within a factor better than \Omega(k^{1/4-\eps}). We also consider a (conceptually harder, but practically even more interesting) variant of 2-dimAP+, where the target space is the grid $\mathbb{Z}_{\sqrt{n}} \times \mathbb{Z}_{\sqrt{n}}$, instead of the entire integer lattice $\mathbb{Z}^2$. For this problem, we obtain a $O(k \cdot \log^2{n})$-approximation using the same LP relaxation. We complement this upper bound by showing an integrality gap of $\Omega(k^{1/2})$, and an \Omega(k^{1/2-\eps})-inapproximability result. Our results naturally extend to the case of arbitrary fixed target dimension $d\geq 1$

Convex Relaxations for Permutation Problems

Seriation seeks to reconstruct a linear order between variables using unsorted, pairwise similarity information. It has direct applications in archeology and shotgun gene sequencing for example. We write seriation as an optimization problem by proving the equivalence between the seriation and combinatorial 2-SUM problems on similarity matrices (2-SUM is a quadratic minimization problem over permutations). The seriation problem can be solved exactly by a spectral algorithm in the noiseless case and we derive several convex relaxations for 2-SUM to improve the robustness of seriation solutions in noisy settings. These convex relaxations also allow us to impose structural constraints on the solution, hence solve semi-supervised seriation problems. We derive new approximation bounds for some of these relaxations and present numerical experiments on archeological data, Markov chains and DNA assembly from shotgun gene sequencing data.Comment: Final journal version, a few typos and references fixe

Ordering a sparse graph to minimize the sum of right ends of edges

Motivated by a warehouse logistics problem we study mappings of the vertices of a graph onto prescribed points on the real line that minimize the sum (or equivalently, the average) of the coordinates of the right ends of all edges. We focus on graphs whose edge numbers do not exceed the vertex numbers too much, that is, graphs with few cycles. Intuitively, dense subgraphs should be placed early in the ordering, in order to finish many edges soon. However, our main “calculation trick” is to compare the objective function with the case when (almost) every vertex is the right end of exactly one edge. The deviations from this case are described by “charges” that can form “dipoles”. This reformulation enables us to derive polynomial algorithms and NP-completeness results for relevant special cases, and FPT results

Of keyboards and beyond - optimization in human-computer interaction

In this thesis, we present optimization frameworks in the area of Human-Computer Interaction. At first, we discuss keyboard layout problems with a special focus on a project we participated in, which aimed at designing the new French keyboard standard. The special nature of this national-scale project and its optimization ingredients are discussed in detail; we specifically highlight our algorithmic contribution to this project. Exploiting the special structure of this design problem, we propose an optimization framework that was efficiently computes keyboard layouts and provides very good optimality guarantees in form of tight lower bounds. The optimized layout that we showed to be nearly optimal was the basis of the new French keyboard standard recently published in the National Assembly in Paris. Moreover, we propose a relaxation for the quadratic assignment problem (a generalization of keyboard layouts) that is based on semidefinite programming. In a branch-and-bound framework, this relaxation achieves competitive results compared to commonly used linear programming relaxations for this problem. Finally, we introduce a modeling language for mixed integer programs that especially focuses on the challenges and features that appear in participatory optimization problems similar to the French keyboard design process.Diese Arbeit behandelt Ansätze zu Optimierungsproblemen im Bereich Human-Computer Interaction. Zuerst diskutieren wir Tastaturbelegungsprobleme mit einem besonderen Fokus auf einem Projekt, an dem wir teilgenommen haben: die Erstellung eines neuen Standards für die französische Tastatur. Wir gehen auf die besondere Struktur dieses Problems und unseren algorithmischen Beitrag ein: ein Algorithmus, der mit Optimierungsmethoden die Struktur dieses speziellen Problems ausnutzt. Mithilfe dieses Algorithmus konnten wir effizient Tastaturbelegungen berechnen und die Qualität dieser Belegungen effektiv (in Form von unteren Schranken) nachweisen. Das finale optimierte Layout, welches mit unserer Methode bewiesenermaßen nahezu optimal ist, diente als Grundlage für den kürzlich in der französischen Nationalversammlung veröffentlichten neuen französischen Tastaturstandard. Darüberhinaus beschreiben wir eine Relaxierung für das quadratische Zuweisungsproblem (eine Verallgemeinerung des Tastaturbelegungsproblems), die auf semidefinieter Programmierung basiert. Wir zeigen, dass unser Algorithmus im Vergleich zu üblich genutzten linearen Relaxierung gut abschneidet. Abschließend definieren und diskutieren wir eine Modellierungssprache für gemischt integrale Programme. Diese Sprache ist speziell auf die besonderen Herausforderungen abgestimmt, die bei interaktiven Optimierungsproblemen auftreten, welche einen ähnlichen Charakter haben wie der Prozess des Designs der französischen Tastatur