Modelling spatial variability of coffee (Coffea Arabica L.) crop condition with multispectral remote sensing data.

Doctor of Philosophy in Environmental Science. University of KwaZulu-Natal, Pietermaritzburg, 2017.Abstract available in PDF file

A systematic review of the use of Deep Learning in Satellite Imagery for Agriculture

Agricultural research is essential for increasing food production to meet the requirements of an increasing population in the coming decades. Recently, satellite technology has been improving rapidly and deep learning has seen much success in generic computer vision tasks and many application areas which presents an important opportunity to improve analysis of agricultural land. Here we present a systematic review of 150 studies to find the current uses of deep learning on satellite imagery for agricultural research. Although we identify 5 categories of agricultural monitoring tasks, the majority of the research interest is in crop segmentation and yield prediction. We found that, when used, modern deep learning methods consistently outperformed traditional machine learning across most tasks; the only exception was that Long Short-Term Memory (LSTM) Recurrent Neural Networks did not consistently outperform Random Forests (RF) for yield prediction. The reviewed studies have largely adopted methodologies from generic computer vision, except for one major omission: benchmark datasets are not utilised to evaluate models across studies, making it difficult to compare results. Additionally, some studies have specifically utilised the extra spectral resolution available in satellite imagery, but other divergent properties of satellite images - such as the hugely different scales of spatial patterns - are not being taken advantage of in the reviewed studies.Comment: 25 pages, 2 figures and lots of large tables. Supplementary materials section included here in main pd

Pre-processing training data improves accuracy and generalisability of convolutional neural network based landscape semantic segmentation

In this paper, we trialled different methods of data preparation for Convolutional Neural Network (CNN) training and semantic segmentation of land use land cover (LULC) features within aerial photography over the Wet Tropics and Atherton Tablelands, Queensland, Australia. This was conducted through trialling and ranking various training patch selection sampling strategies, patch and batch sizes and data augmentations and scaling. We also compared model accuracy through producing the LULC classification using a single pass of a grid of patches and averaging multiple grid passes and three rotated version of each patch. Our results showed: a stratified random sampling approach for producing training patches improved the accuracy of classes with a smaller area while having minimal effect on larger classes; a smaller number of larger patches compared to a larger number of smaller patches improves model accuracy; applying data augmentations and scaling are imperative in creating a generalised model able to accurately classify LULC features in imagery from a different date and sensor; and producing the output classification by averaging multiple grids of patches and three rotated versions of each patch produced and more accurate and aesthetic result. Combining the findings from the trials, we fully trained five models on the 2018 training image and applied the model to the 2015 test image with the output LULC classifications achieving an average kappa of 0.84 user accuracy of 0.81 and producer accuracy of 0.87. This study has demonstrated the importance of data pre-processing for developing a generalised deep-learning model for LULC classification which can be applied to a different date and sensor. Future research using CNN and earth observation data should implement the findings of this study to increase LULC model accuracy and transferability

Evaluating remote sensing datasets and machine learning algorithms for mapping plantations and successional forests in Phnom Kulen National Park of Cambodia

International audienceThis study develops a modelling framework by utilizing multi-sensor imagery for classifying different forest and land use types in the Phnom Kulen National Park (PKNP) in Cambodia. Three remote sensing datasets (Landsat optical data, ALOS L-band data and LiDAR derived Canopy Height Model (CHM)) were used in conjunction with three different machine learning (ML) regression techniques (Support Vector Machines (SVM), Random Forests (RF) and Artificial Neural Networks (ANN)). These ML methods were implemented on (a) Landsat spectral data, (b) Landsat spectral band & ALOS backscatter data, and (c) Landsat spectral band, ALOS backscatter data, & LiDAR CHM data. The Landsat-ALOS combination produced more accurate classification results (95% overall accuracy with SVM) compared to Landsat-only bands for all ML models. Inclusion of LiDAR CHM (which is a proxy for vertical canopy heights) improved the overall accuracy to 98%. The research establishes that majority of PKNP is dominated by cashew plantations and the nearly intact forests are concentrated in the more inaccessible parts of the park. The findings demonstrate how different RS datasets can be used in conjunction with different ML models to map forests that had undergone varying levels of degradation and plantations

Remote Sensing in Mangroves

The book highlights recent advancements in the mapping and monitoring of mangrove forests using earth observation satellite data. New and historical satellite data and aerial photographs have been used to map the extent, change and bio-physical parameters, such as phenology and biomass. Research was conducted in different parts of the world. Knowledge and understanding gained from this book can be used for the sustainable management of mangrove forests of the worl

3D Remote Sensing Applications in Forest Ecology: Composition, Structure and Function

Dear Colleagues, The composition, structure and function of forest ecosystems are the key features characterizing their ecological properties, and can thus be crucially shaped and changed by various biotic and abiotic factors on multiple spatial scales. The magnitude and extent of these changes in recent decades calls for enhanced mitigation and adaption measures. Remote sensing data and methods are the main complementary sources of up-to-date synoptic and objective information of forest ecology. Due to the inherent 3D nature of forest ecosystems, the analysis of 3D sources of remote sensing data is considered to be most appropriate for recreating the forest’s compositional, structural and functional dynamics. In this Special Issue of Forests, we published a set of state-of-the-art scientific works including experimental studies, methodological developments and model validations, all dealing with the general topic of 3D remote sensing-assisted applications in forest ecology. We showed applications in forest ecology from a broad collection of method and sensor combinations, including fusion schemes. All in all, the studies and their focuses are as broad as a forest’s ecology or the field of remote sensing and, thus, reflect the very diverse usages and directions toward which future research and practice will be directed

Operationalization of Remote Sensing Solutions for Sustainable Forest Management

The great potential of remote sensing technologies for operational use in sustainable forest management is addressed in this book, which is the reprint of papers published in the Remote Sensing Special Issue “Operationalization of Remote Sensing Solutions for Sustainable Forest Management”. The studies come from three continents and cover multiple remote sensing systems (including terrestrial mobile laser scanning, unmanned aerial vehicles, airborne laser scanning, and satellite data acquisition) and a diversity of data processing algorithms, with a focus on machine learning approaches. The focus of the studies ranges from identification and characterization of individual trees to deriving national- or even continental-level forest attributes and maps. There are studies carefully describing exercises on the case study level, and there are also studies introducing new methodologies for transdisciplinary remote sensing applications. Even though most of the authors look forward to continuing their research, nearly all studies introduced are ready for operational use or have already been implemented in practical forestry

The global tree carrying capacity (keynote)

editorial reviewe

Applications of Satellite Earth Observations section - NEODAAS: Providing satellite data for efficient research

The NERC Earth Observation Data Acquisition and Analysis Service (NEODAAS) provides a central point of Earth Observation (EO) satellite data access and expertise for UK researchers. The service is tailored to individual users’ requirements to ensure that researchers can focus effort on their science, rather than struggling with correct use of unfamiliar satellite data

Satellite monitoring of harmful algal blooms (HABs) to protect the aquaculture industry

Harmful algal blooms (HABs) can cause sudden and considerable losses to fish farms, for example 500,000 salmon during one bloom in Shetland, and also present a threat to human health. Early warning allows the industry to take protective measures. PML's satellite monitoring of HABs is now funded by the Scottish aquaculture industry. The service involves processing EO ocean colour data from NASA and ESA in near-real time, and applying novel techniques for discriminating certain harmful blooms from harmless algae. Within the AQUA-USERS project we are extending this capability to further HAB species within several European countries