Scaling up classification rule induction through parallel processing

The fast increase in the size and number of databases demands data mining approaches that are scalable to large amounts of data. This has led to the exploration of parallel computing technologies in order to perform data mining tasks concurrently using several processors. Parallelization seems to be a natural and cost-effective way to scale up data mining technologies. One of the most important of these data mining technologies is the classification of newly recorded data. This paper surveys advances in parallelization in the field of classification rule induction

DISCOVERING INTERESTING PATTERNS FOR INVESTMENT DECISION MAKING WITH GLOWER C - A GENETIC LEARNER OVERLAID WITH ENTROPY REDUCTION

Prediction in financial domains is notoriously difficult for a number of reasons. First, theories tend to be weak or non-existent, which makes problem formulation open-ended by forcing us to consider a large number of independent variables and thereby increasing the dimensionality of the search space. Second, the weak relationships among variables tend to be nonlinear, and may hold only in limited areas of the search space. Third, in financial practice, where analysts conduct extensive manual analysis of historically well performing indicators, a key is to find the hidden interactions among variables that perform well in combination. Unfortunately, these are exactly the patterns that the greedy search biases incorporated by many standard rule algorithms will miss. In this paper, we describe and evaluate several variations of a new genetic learning algorithm (GLOWER) on a variety of data sets. The design of GLOWER has been motivated by financial prediction problems, but incorporates successful ideas from tree induction and rule learning. We examine the performance of several GLOWER variants on two UCI data sets as well as on a standard financial prediction problem (S&P500 stock returns), using the results to identify and use one of the better variants for further comparisons. We introduce a new (to KDD) financial prediction problem (predicting positive and negative earnings surprises), and experiment withGLOWER, contrasting it with tree- and rule-induction approaches. Our results are encouraging, showing that GLOWER has the ability to uncover effective patterns for difficult problems that have weak structure and significant nonlinearities.Information Systems Working Papers Serie

A new approach of top-down induction of decision trees for knowledge discovery

Top-down induction of decision trees is the most popular technique for classification in the field of data mining and knowledge discovery. Quinlan developed the basic induction algorithm of decision trees, ID3 (1984), and extended to C4.5 (1993). There is a lot of research work for dealing with a single attribute decision-making node (so-called the first-order decision) of decision trees. Murphy and Pazzani (1991) addressed about multiple-attribute conditions at decision-making nodes. They show that higher order decision-making generates smaller decision trees and better accuracy. However, there always exist NP-complete combinations of multiple-attribute decision-makings.;We develop a new algorithm of second-order decision-tree inductions (SODI) for nominal attributes. The induction rules of first-order decision trees are combined by \u27AND\u27 logic only, but those of SODI consist of \u27AND\u27, \u27OR\u27, and \u27OTHERWISE\u27 logics. It generates more accurate results and smaller decision trees than any first-order decision tree inductions.;Quinlan used information gains via VC-dimension (Vapnik-Chevonenkis; Vapnik, 1995) for clustering the experimental values for each numerical attribute. However, many researchers have discovered the weakness of the use of VC-dim analysis. Bennett (1997) sophistically applies support vector machines (SVM) to decision tree induction. We suggest a heuristic algorithm (SVMM; SVM for Multi-category) that combines a TDIDT scheme with SVM. In this thesis it will be also addressed how to solve multiclass classification problems.;Our final goal for this thesis is IDSS (Induction of Decision Trees using SODI and SVMM). We will address how to combine SODI and SVMM for the construction of top-down induction of decision trees in order to minimize the generalized penalty cost

Inference of single-cell phylogenies from lineage tracing data using Cassiopeia.

The pairing of CRISPR/Cas9-based gene editing with massively parallel single-cell readouts now enables large-scale lineage tracing. However, the rapid growth in complexity of data from these assays has outpaced our ability to accurately infer phylogenetic relationships. First, we introduce Cassiopeia-a suite of scalable maximum parsimony approaches for tree reconstruction. Second, we provide a simulation framework for evaluating algorithms and exploring lineage tracer design principles. Finally, we generate the most complex experimental lineage tracing dataset to date, 34,557 human cells continuously traced over 15 generations, and use it for benchmarking phylogenetic inference approaches. We show that Cassiopeia outperforms traditional methods by several metrics and under a wide variety of parameter regimes, and provide insight into the principles for the design of improved Cas9-enabled recorders. Together, these should broadly enable large-scale mammalian lineage tracing efforts. Cassiopeia and its benchmarking resources are publicly available at www.github.com/YosefLab/Cassiopeia

Application of decision trees and multivariate regression trees in design and optimization

Induction of decision trees and regression trees is a powerful technique not only for performing ordinary classification and regression analysis but also for discovering the often complex knowledge which describes the input-output behavior of a learning system in qualitative forms;In the area of classification (discrimination analysis), a new technique called IDea is presented for performing incremental learning with decision trees. It is demonstrated that IDea\u27s incremental learning can greatly reduce the spatial complexity of a given set of training examples. Furthermore, it is shown that this reduction in complexity can also be used as an effective tool for improving the learning efficiency of other types of inductive learners such as standard backpropagation neural networks;In the area of regression analysis, a new methodology for performing multiobjective optimization has been developed. Specifically, we demonstrate that muitiple-objective optimization through induction of multivariate regression trees is a powerful alternative to the conventional vector optimization techniques. Furthermore, in an attempt to investigate the effect of various types of splitting rules on the overall performance of the optimizing system, we present a tree partitioning algorithm which utilizes a number of techniques derived from diverse fields of statistics and fuzzy logic. These include: two multivariate statistical approaches based on dispersion matrices, an information-theoretic measure of covariance complexity which is typically used for obtaining multivariate linear models, two newly-formulated fuzzy splitting rules based on Pearson\u27s parametric and Kendall\u27s nonparametric measures of association, Bellman and Zadeh\u27s fuzzy decision-maximizing approach within an inductive framework, and finally, the multidimensional extension of a widely-used fuzzy entropy measure. The advantages of this new approach to optimization are highlighted by presenting three examples which respectively deal with design of a three-bar truss, a beam, and an electric discharge machining (EDM) process