1,812 research outputs found
AT-GIS: highly parallel spatial query processing with associative transducers
Users in many domains, including urban planning, transportation, and environmental science want to execute analytical queries over continuously updated spatial datasets. Current solutions for largescale spatial query processing either rely on extensions to RDBMS, which entails expensive loading and indexing phases when the data changes, or distributed map/reduce frameworks, running on resource-hungry compute clusters. Both solutions struggle with the sequential bottleneck of parsing complex, hierarchical spatial data formats, which frequently dominates query execution time. Our goal is to fully exploit the parallelism offered by modern multicore CPUs for parsing and query execution, thus providing the performance of a cluster with the resources of a single machine. We describe AT-GIS, a highly-parallel spatial query processing system that scales linearly to a large number of CPU cores. ATGIS integrates the parsing and querying of spatial data using a new computational abstraction called associative transducers(ATs). ATs can form a single data-parallel pipeline for computation without requiring the spatial input data to be split into logically independent blocks. Using ATs, AT-GIS can execute, in parallel, spatial query operators on the raw input data in multiple formats, without any pre-processing. On a single 64-core machine, AT-GIS provides 3× the performance of an 8-node Hadoop cluster with 192 cores for containment queries, and 10× for aggregation queries
MPI-Vector-IO: Parallel I/O and Partitioning for Geospatial Vector Data
In recent times, geospatial datasets are growing in terms of size, complexity and heterogeneity. High performance systems are needed to analyze such data to produce actionable insights in an efficient manner. For polygonal a.k.a vector datasets, operations such as I/O, data partitioning, communication, and load balancing becomes challenging in a cluster environment. In this work, we present MPI-Vector-IO 1 , a parallel I/O library that we have designed using MPI-IO specifically for partitioning and reading irregular vector data formats such as Well Known Text. It makes MPI aware of spatial data, spatial primitives and provides support for spatial data types embedded within collective computation and communication using MPI message-passing library. These abstractions along with parallel I/O support are useful for parallel Geographic Information System (GIS) application development on HPC platforms
The NASA Astrophysics Data System: Architecture
The powerful discovery capabilities available in the ADS bibliographic
services are possible thanks to the design of a flexible search and retrieval
system based on a relational database model. Bibliographic records are stored
as a corpus of structured documents containing fielded data and metadata, while
discipline-specific knowledge is segregated in a set of files independent of
the bibliographic data itself.
The creation and management of links to both internal and external resources
associated with each bibliography in the database is made possible by
representing them as a set of document properties and their attributes.
To improve global access to the ADS data holdings, a number of mirror sites
have been created by cloning the database contents and software on a variety of
hardware and software platforms.
The procedures used to create and manage the database and its mirrors have
been written as a set of scripts that can be run in either an interactive or
unsupervised fashion.
The ADS can be accessed at http://adswww.harvard.eduComment: 25 pages, 8 figures, 3 table
Scalable structural index construction for json analytics
JavaScript Object Notation ( JSON) and its variants have gained great popularity in recent years. Unfortunately, the performance of their analytics is often dragged down by the expensive JSON parsing. To address this, recent work has shown that building bitwise indices on JSON data, called structural indices, can greatly accelerate querying. Despite its promise, the existing structural index construction does not scale well as records become larger and more complex, due to its (inherently) sequential construction process and the involvement of costly memory copies that grow as the nesting level increases. To address the above issues, this work introduces Pison – a more memory-efficient structural index constructor with supports of intra-record parallelism. First, Pison features a redesign of the bottleneck step in the existing solution. The new design is not only simpler but more memory-efficient. More importantly, Pison is able to build structural indices for a single bulky record in parallel, enabled by a group of customized parallelization techniques. Finally, Pison is also optimized for better data locality, which is especially critical in the scenario of bulky record processing. Our evaluation using real-world JSON datasets shows that Pison achieves 9.8X speedup (on average) over the existing structural index construction solution for bulky records and 4.6X speedup (on average) of end-to-end performance (indexing plus querying) over a state-of-the-art SIMD-based JSON parser on a 16-core machine
Building A Big Data Analytical Pipeline With Hadoop For Processing Enterprise XML Data
The current paper shows an end-to-end approach how to process XML files in the Hadoop ecosystem. The work demonstrates a way how to handle problems faced during the analysis of a large amounts of XML files. The paper presents a completed Extract, Load and Transform (ELT) cycle, which is based on the open source software stack Apache Hadoop, which became a standard for processing of a huge amounts of data. This work shows that applying open source solutions to a particular set of problems could not be enough. In fact, most of big data processing open source tools were implemented only to address a limited number of the use cases. This work explains and shows, why exactly specific use cases may require significant extension with a self-developed multiple software components. The use case described in the paper deals with huge amounts of semi-structured XML files, which supposed to be persisted and processed daily
The Family of MapReduce and Large Scale Data Processing Systems
In the last two decades, the continuous increase of computational power has
produced an overwhelming flow of data which has called for a paradigm shift in
the computing architecture and large scale data processing mechanisms.
MapReduce is a simple and powerful programming model that enables easy
development of scalable parallel applications to process vast amounts of data
on large clusters of commodity machines. It isolates the application from the
details of running a distributed program such as issues on data distribution,
scheduling and fault tolerance. However, the original implementation of the
MapReduce framework had some limitations that have been tackled by many
research efforts in several followup works after its introduction. This article
provides a comprehensive survey for a family of approaches and mechanisms of
large scale data processing mechanisms that have been implemented based on the
original idea of the MapReduce framework and are currently gaining a lot of
momentum in both research and industrial communities. We also cover a set of
introduced systems that have been implemented to provide declarative
programming interfaces on top of the MapReduce framework. In addition, we
review several large scale data processing systems that resemble some of the
ideas of the MapReduce framework for different purposes and application
scenarios. Finally, we discuss some of the future research directions for
implementing the next generation of MapReduce-like solutions.Comment: arXiv admin note: text overlap with arXiv:1105.4252 by other author
AsterixDB: A Scalable, Open Source BDMS
AsterixDB is a new, full-function BDMS (Big Data Management System) with a
feature set that distinguishes it from other platforms in today's open source
Big Data ecosystem. Its features make it well-suited to applications like web
data warehousing, social data storage and analysis, and other use cases related
to Big Data. AsterixDB has a flexible NoSQL style data model; a query language
that supports a wide range of queries; a scalable runtime; partitioned,
LSM-based data storage and indexing (including B+-tree, R-tree, and text
indexes); support for external as well as natively stored data; a rich set of
built-in types; support for fuzzy, spatial, and temporal types and queries; a
built-in notion of data feeds for ingestion of data; and transaction support
akin to that of a NoSQL store.
Development of AsterixDB began in 2009 and led to a mid-2013 initial open
source release. This paper is the first complete description of the resulting
open source AsterixDB system. Covered herein are the system's data model, its
query language, and its software architecture. Also included are a summary of
the current status of the project and a first glimpse into how AsterixDB
performs when compared to alternative technologies, including a parallel
relational DBMS, a popular NoSQL store, and a popular Hadoop-based SQL data
analytics platform, for things that both technologies can do. Also included is
a brief description of some initial trials that the system has undergone and
the lessons learned (and plans laid) based on those early "customer"
engagements
Efficient similarity computations on parallel machines using data shaping
Similarity computation is a fundamental operation in all forms of data. Big Data is, typically, characterized by attributes such as volume, velocity, variety, veracity, etc. In general, Big Data variety appears as structured, semi-structured or unstructured forms. The volume of Big Data in general, and semi-structured data in particular, is increasing at a phenomenal rate. Big Data phenomenon is posing new set of challenges to similarity computation problems occurring in semi-structured data.
Technology and processor architecture trends suggest very strongly that future processors shall have ten\u27s of thousands of cores (hardware threads). Another crucial trend is that ratio between on-chip and off-chip memory to core counts is decreasing. State-of-the-art parallel computing platforms such as General Purpose Graphics Processors (GPUs) and MICs are promising for high performance as well high throughput computing. However, processing semi-structured component of Big Data efficiently using parallel computing systems (e.g. GPUs) is challenging. Reason being most of the emerging platforms (e.g. GPUs) are organized as Single Instruction Multiple Thread/Data machines which are highly structured, where several cores (streaming processors) operate in lock-step manner, or they require a high degree of task-level parallelism.
We argue that effective and efficient solutions to key similarity computation problems need to operate in a synergistic manner with the underlying computing hardware. Moreover, semi-structured form input data needs to be shaped or reorganized with the goal to exploit the enormous computing power of \textit{state-of-the-art} highly threaded architectures such as GPUs. For example, shaping input data (via encoding) with minimal data-dependence can facilitate flexible and concurrent computations on high throughput accelerators/co-processors such as GPU, MIC, etc.
We consider various instances of traditional and futuristic problems occurring in intersection of semi-structured data and data analytics. Preprocessing is an operation common at initial stages of data processing pipelines. Typically, the preprocessing involves operations such as data extraction, data selection, etc. In context of semi-structured data, twig filtering is used in identifying (and extracting) data of interest. Duplicate detection and record linkage operations are useful in preprocessing tasks such as data cleaning, data fusion, and also useful in data mining, etc., in order to find similar tree objects. Likewise, tree edit is a fundamental metric used in context of tree problems; and similarity computation between trees another key problem in context of Big Data.
This dissertation makes a case for platform-centric data shaping as a potent mechanism to tackle the data- and architecture-borne issues in context of semi-structured data processing on GPU and GPU-like parallel architecture machines. In this dissertation, we propose several data shaping techniques for tree matching problems occurring in semi-structured data. We experiment with real world datasets. The experimental results obtained reveal that the proposed platform-centric data shaping approach is effective for computing similarities between tree objects using GPGPUs. The techniques proposed result in performance gains up to three orders of magnitude, subject to problem and platform
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