Solving Stable Matching Problems via Cooperative Parallel Local Search

International audienceStable matching problems and its variants have several practical applications, like the Hospital/Residents problem, stable roommates problem or bipartite market sharing. An important generalization problem is the SMTI which allows for incompleteness and ties in the user's preference lists. Finding a maximal size stable matching for SMTI is compu-tationally difficult. We developed a Local Search method to solve SMTI using the Adaptive Search algorithm and present experimental evidence that this approach is much more efficient than state-of-the-art exact and approximate methods (in terms of both computational effort required and quality of solution). We also tried a parallel version of our algorithm. For this we reused the Cooperative Parallel Local Search framework (CPLS) we designed. CPLS is a highly parametric framework for the execution in parallel of local search solvers allowing them to cooperate though communication. The cooperative parallel version of our local search algorithm improves performance so much that very large and hard instances can be solved quickly

Combinatorial Approaches for Mass Spectra Recalibration

Mass spectrometry has become one of the most popular analysis techniques in Proteomics and Systems Biology. With the creation of larger datasets, the automated recalibration of mass spectra becomes important to ensure that every peak in the sample spectrum is correctly assigned to some peptide and protein. Algorithms for recalibrating mass spectra have to be robust with respect to wrongly assigned peaks, as well as efficient due to the amount of mass spectrometry data. The recalibration of mass spectra leads us to the problem of finding an optimal matching between mass spectra under measurement errors. We have developed two deterministic methods that allow robust computation of such a matching: The first approach uses a computational geometry interpretation of the problem, and tries to find two parallel lines with constant distance that stab a maximal number of points in the plane. The second approach is based on finding a maximal common approximate subsequence, and improves existing algorithms by one order of magnitude exploiting the sequential nature of the matching problem. We compare our results to a computational geometry algorithm using a topological line-sweep

Theoretically Efficient Parallel Graph Algorithms Can Be Fast and Scalable

There has been significant recent interest in parallel graph processing due to the need to quickly analyze the large graphs available today. Many graph codes have been designed for distributed memory or external memory. However, today even the largest publicly-available real-world graph (the Hyperlink Web graph with over 3.5 billion vertices and 128 billion edges) can fit in the memory of a single commodity multicore server. Nevertheless, most experimental work in the literature report results on much smaller graphs, and the ones for the Hyperlink graph use distributed or external memory. Therefore, it is natural to ask whether we can efficiently solve a broad class of graph problems on this graph in memory. This paper shows that theoretically-efficient parallel graph algorithms can scale to the largest publicly-available graphs using a single machine with a terabyte of RAM, processing them in minutes. We give implementations of theoretically-efficient parallel algorithms for 20 important graph problems. We also present the optimizations and techniques that we used in our implementations, which were crucial in enabling us to process these large graphs quickly. We show that the running times of our implementations outperform existing state-of-the-art implementations on the largest real-world graphs. For many of the problems that we consider, this is the first time they have been solved on graphs at this scale. We have made the implementations developed in this work publicly-available as the Graph-Based Benchmark Suite (GBBS).Comment: This is the full version of the paper appearing in the ACM Symposium on Parallelism in Algorithms and Architectures (SPAA), 201

Dynamic Algorithms for the Massively Parallel Computation Model

The Massive Parallel Computing (MPC) model gained popularity during the last decade and it is now seen as the standard model for processing large scale data. One significant shortcoming of the model is that it assumes to work on static datasets while, in practice, real-world datasets evolve continuously. To overcome this issue, in this paper we initiate the study of dynamic algorithms in the MPC model. We first discuss the main requirements for a dynamic parallel model and we show how to adapt the classic MPC model to capture them. Then we analyze the connection between classic dynamic algorithms and dynamic algorithms in the MPC model. Finally, we provide new efficient dynamic MPC algorithms for a variety of fundamental graph problems, including connectivity, minimum spanning tree and matching.Comment: Accepted to the 31st ACM Symposium on Parallelism in Algorithms and Architectures (SPAA 2019

On Derandomizing Local Distributed Algorithms

The gap between the known randomized and deterministic local distributed algorithms underlies arguably the most fundamental and central open question in distributed graph algorithms. In this paper, we develop a generic and clean recipe for derandomizing LOCAL algorithms. We also exhibit how this simple recipe leads to significant improvements on a number of problem. Two main results are: - An improved distributed hypergraph maximal matching algorithm, improving on Fischer, Ghaffari, and Kuhn [FOCS'17], and giving improved algorithms for edge-coloring, maximum matching approximation, and low out-degree edge orientation. The first gives an improved algorithm for Open Problem 11.4 of the book of Barenboim and Elkin, and the last gives the first positive resolution of their Open Problem 11.10. - An improved distributed algorithm for the Lov\'{a}sz Local Lemma, which gets closer to a conjecture of Chang and Pettie [FOCS'17], and moreover leads to improved distributed algorithms for problems such as defective coloring and $k$-SAT.Comment: 37 page