Image Characterization and Classification by Physical Complexity

We present a method for estimating the complexity of an image based on Bennett's concept of logical depth. Bennett identified logical depth as the appropriate measure of organized complexity, and hence as being better suited to the evaluation of the complexity of objects in the physical world. Its use results in a different, and in some sense a finer characterization than is obtained through the application of the concept of Kolmogorov complexity alone. We use this measure to classify images by their information content. The method provides a means for classifying and evaluating the complexity of objects by way of their visual representations. To the authors' knowledge, the method and application inspired by the concept of logical depth presented herein are being proposed and implemented for the first time.Comment: 30 pages, 21 figure

Approximations of Algorithmic and Structural Complexity Validate Cognitive-behavioural Experimental Results

We apply methods for estimating the algorithmic complexity of sequences to behavioural sequences of three landmark studies of animal behavior each of increasing sophistication, including foraging communication by ants, flight patterns of fruit flies, and tactical deception and competition strategies in rodents. In each case, we demonstrate that approximations of Logical Depth and Kolmogorv-Chaitin complexity capture and validate previously reported results, in contrast to other measures such as Shannon Entropy, compression or ad hoc. Our method is practically useful when dealing with short sequences, such as those often encountered in cognitive-behavioural research. Our analysis supports and reveals non-random behavior (LD and K complexity) in flies even in the absence of external stimuli, and confirms the "stochastic" behaviour of transgenic rats when faced that they cannot defeat by counter prediction. The method constitutes a formal approach for testing hypotheses about the mechanisms underlying animal behaviour.Comment: 28 pages, 7 figures and 2 table

Training-free Measures Based on Algorithmic Probability Identify High Nucleosome Occupancy in DNA Sequences

We introduce and study a set of training-free methods of information-theoretic and algorithmic complexity nature applied to DNA sequences to identify their potential capabilities to determine nucleosomal binding sites. We test our measures on well-studied genomic sequences of different sizes drawn from different sources. The measures reveal the known in vivo versus in vitro predictive discrepancies and uncover their potential to pinpoint (high) nucleosome occupancy. We explore different possible signals within and beyond the nucleosome length and find that complexity indices are informative of nucleosome occupancy. We compare against the gold standard (Kaplan model) and find similar and complementary results with the main difference that our sequence complexity approach. For example, for high occupancy, complexity-based scores outperform the Kaplan model for predicting binding representing a significant advancement in predicting the highest nucleosome occupancy following a training-free approach.Comment: 8 pages main text (4 figures), 12 total with Supplementary (1 figure

Estimating the Algorithmic Complexity of Stock Markets

Randomness and regularities in Finance are usually treated in probabilistic terms. In this paper, we develop a completely different approach in using a non-probabilistic framework based on the algorithmic information theory initially developed by Kolmogorov (1965). We present some elements of this theory and show why it is particularly relevant to Finance, and potentially to other sub-fields of Economics as well. We develop a generic method to estimate the Kolmogorov complexity of numeric series. This approach is based on an iterative "regularity erasing procedure" implemented to use lossless compression algorithms on financial data. Examples are provided with both simulated and real-world financial time series. The contributions of this article are twofold. The first one is methodological : we show that some structural regularities, invisible with classical statistical tests, can be detected by this algorithmic method. The second one consists in illustrations on the daily Dow-Jones Index suggesting that beyond several well-known regularities, hidden structure may in this index remain to be identified

A Computable Measure of Algorithmic Probability by Finite Approximations with an Application to Integer Sequences

Given the widespread use of lossless compression algorithms to approximate algorithmic (Kolmogorov-Chaitin) complexity, and that lossless compression algorithms fall short at characterizing patterns other than statistical ones not different to entropy estimations, here we explore an alternative and complementary approach. We study formal properties of a Levin-inspired measure $m$ calculated from the output distribution of small Turing machines. We introduce and justify finite approximations $m_k$ that have been used in some applications as an alternative to lossless compression algorithms for approximating algorithmic (Kolmogorov-Chaitin) complexity. We provide proofs of the relevant properties of both $m$ and $m_k$ and compare them to Levin's Universal Distribution. We provide error estimations of $m_k$ with respect to $m$. Finally, we present an application to integer sequences from the Online Encyclopedia of Integer Sequences which suggests that our AP-based measures may characterize non-statistical patterns, and we report interesting correlations with textual, function and program description lengths of the said sequences.Comment: As accepted by the journal Complexity (Wiley/Hindawi

Correlation of Automorphism Group Size and Topological Properties with Program-size Complexity Evaluations of Graphs and Complex Networks

We show that numerical approximations of Kolmogorov complexity (K) applied to graph adjacency matrices capture some group-theoretic and topological properties of graphs and empirical networks ranging from metabolic to social networks. That K and the size of the group of automorphisms of a graph are correlated opens up interesting connections to problems in computational geometry, and thus connects several measures and concepts from complexity science. We show that approximations of K characterise synthetic and natural networks by their generating mechanisms, assigning lower algorithmic randomness to complex network models (Watts-Strogatz and Barabasi-Albert networks) and high Kolmogorov complexity to (random) Erdos-Renyi graphs. We derive these results via two different Kolmogorov complexity approximation methods applied to the adjacency matrices of the graphs and networks. The methods used are the traditional lossless compression approach to Kolmogorov complexity, and a normalised version of a Block Decomposition Method (BDM) measure, based on algorithmic probability theory.Comment: 15 2-column pages, 20 figures. Forthcoming in Physica A: Statistical Mechanics and its Application