Repetition Detection in a Dynamic String

A string UU for a non-empty string U is called a square. Squares have been well-studied both from a combinatorial and an algorithmic perspective. In this paper, we are the first to consider the problem of maintaining a representation of the squares in a dynamic string S of length at most n. We present an algorithm that updates this representation in n^o(1) time. This representation allows us to report a longest square-substring of S in O(1) time and all square-substrings of S in O(output) time. We achieve this by introducing a novel tool - maintaining prefix-suffix matches of two dynamic strings. We extend the above result to address the problem of maintaining a representation of all runs (maximal repetitions) of the string. Runs are known to capture the periodic structure of a string, and, as an application, we show that our representation of runs allows us to efficiently answer periodicity queries for substrings of a dynamic string. These queries have proven useful in static pattern matching problems and our techniques have the potential of offering solutions to these problems in a dynamic text setting

Algorithmic Complexity for Short Binary Strings Applied to Psychology: A Primer

Since human randomness production has been studied and widely used to assess executive functions (especially inhibition), many measures have been suggested to assess the degree to which a sequence is random-like. However, each of them focuses on one feature of randomness, leading authors to have to use multiple measures. Here we describe and advocate for the use of the accepted universal measure for randomness based on algorithmic complexity, by means of a novel previously presented technique using the the definition of algorithmic probability. A re-analysis of the classical Radio Zenith data in the light of the proposed measure and methodology is provided as a study case of an application.Comment: To appear in Behavior Research Method

A CCA2 Secure Variant of the McEliece Cryptosystem

The McEliece public-key encryption scheme has become an interesting alternative to cryptosystems based on number-theoretical problems. Differently from RSA and ElGa- mal, McEliece PKC is not known to be broken by a quantum computer. Moreover, even tough McEliece PKC has a relatively big key size, encryption and decryption operations are rather efficient. In spite of all the recent results in coding theory based cryptosystems, to the date, there are no constructions secure against chosen ciphertext attacks in the standard model - the de facto security notion for public-key cryptosystems. In this work, we show the first construction of a McEliece based public-key cryptosystem secure against chosen ciphertext attacks in the standard model. Our construction is inspired by a recently proposed technique by Rosen and Segev

Decoding Across the Quantum LDPC Code Landscape

We show that belief propagation combined with ordered statistics post-processing is a general decoder for quantum low density parity check codes constructed from the hypergraph product. To this end, we run numerical simulations of the decoder applied to three families of hypergraph product code: topological codes, fixed-rate random codes and a new class of codes that we call semi-topological codes. Our new code families share properties of both topological and random hypergraph product codes, with a construction that allows for a finely-controlled trade-off between code threshold and stabilizer locality. Our results indicate thresholds across all three families of hypergraph product code, and provide evidence of exponential suppression in the low error regime. For the Toric code, we observe a threshold in the range $9.9\pm0.2\%$. This result improves upon previous quantum decoders based on belief propagation, and approaches the performance of the minimum weight perfect matching algorithm. We expect semi-topological codes to have the same threshold as Toric codes, as they are identical in the bulk, and we present numerical evidence supporting this observation.Comment: The code for the BP+OSD decoder used in this work can be found on Github: https://github.com/quantumgizmos/bp_os

Finding approximate palindromes in strings

We introduce a novel definition of approximate palindromes in strings, and provide an algorithm to find all maximal approximate palindromes in a string with up to $k$ errors. Our definition is based on the usual edit operations of approximate pattern matching, and the algorithm we give, for a string of size $n$ on a fixed alphabet, runs in $O(k^2 n)$ time. We also discuss two implementation-related improvements to the algorithm, and demonstrate their efficacy in practice by means of both experiments and an average-case analysis

Efficient Seeds Computation Revisited

The notion of the cover is a generalization of a period of a string, and there are linear time algorithms for finding the shortest cover. The seed is a more complicated generalization of periodicity, it is a cover of a superstring of a given string, and the shortest seed problem is of much higher algorithmic difficulty. The problem is not well understood, no linear time algorithm is known. In the paper we give linear time algorithms for some of its versions --- computing shortest left-seed array, longest left-seed array and checking for seeds of a given length. The algorithm for the last problem is used to compute the seed array of a string (i.e., the shortest seeds for all the prefixes of the string) in $O(n^2)$ time. We describe also a simpler alternative algorithm computing efficiently the shortest seeds. As a by-product we obtain an $O(n\log{(n/m)})$ time algorithm checking if the shortest seed has length at least $m$ and finding the corresponding seed. We also correct some important details missing in the previously known shortest-seed algorithm (Iliopoulos et al., 1996).Comment: 14 pages, accepted to CPM 201