A Typed Model for Linked Data

The term Linked Data is used to describe ubiquitous and emerging semi-structured data formats on the Web. URIs in Linked Data allow diverse data sources to link to each other, forming a Web of Data. A calculus which models concurrent queries and updates over Linked Data is presented. The calculus exhibits operations essential for declaring rich atomic actions. The operations recover emergent structure in the loosely structured Web of Data. The calculus is executable due to its operational semantics. A light type system ensures that URIs with a distinguished role are used consistently. The main theorem verifies that the light type system and operational semantics work at the same level of granularity, so are compatible. Examples show that a range of existing and emerging standards are captured. Data formats include RDF, named graphs and feeds. The primitives of the calculus model SPARQL Query and the Atom Publishing Protocol. The subtype system is based on RDFS, which improves interoperability. Examples focuss on the SPARQL Update proposal for which a fine grained operational semantics is developed. Further potential high level languages are outlined for exploiting Linked Data

MISSEL: a method to identify a large number of small species-specific genomic subsequences and its application to viruses classification

Continuous improvements in next generation sequencing technologies led to ever-increasing collections of genomic sequences, which have not been easily characterized by biologists, and whose analysis requires huge computational effort. The classification of species emerged as one of the main applications of DNA analysis and has been addressed with several approaches, e.g., multiple alignments-, phylogenetic trees-, statistical- and character-based methods

Learning Language from a Large (Unannotated) Corpus

A novel approach to the fully automated, unsupervised extraction of dependency grammars and associated syntax-to-semantic-relationship mappings from large text corpora is described. The suggested approach builds on the authors' prior work with the Link Grammar, RelEx and OpenCog systems, as well as on a number of prior papers and approaches from the statistical language learning literature. If successful, this approach would enable the mining of all the information needed to power a natural language comprehension and generation system, directly from a large, unannotated corpus.Comment: 29 pages, 5 figures, research proposa