Quantum Genetics, Quantum Automata and Quantum Computation

The concepts of quantum automata and quantum computation are studied in the context of quantum genetics and genetic networks with nonlinear dynamics. In a previous publication (Baianu,1971a) the formal concept of quantum automaton was introduced and its possible implications for genetic and metabolic activities in living cells and organisms were considered. This was followed by a report on quantum and abstract, symbolic computation based on the theory of categories, functors and natural transformations (Baianu,1971b). The notions of topological semigroup, quantum automaton,or quantum computer, were then suggested with a view to their potential applications to the analogous simulation of biological systems, and especially genetic activities and nonlinear dynamics in genetic networks. Further, detailed studies of nonlinear dynamics in genetic networks were carried out in categories of n-valued, Lukasiewicz Logic Algebras that showed significant dissimilarities (Baianu, 1977) from Bolean models of human neural networks (McCullough and Pitts,1945). Molecular models in terms of categories, functors and natural transformations were then formulated for uni-molecular chemical transformations, multi-molecular chemical and biochemical transformations (Baianu, 1983,2004a). Previous applications of computer modeling, classical automata theory, and relational biology to molecular biology, oncogenesis and medicine were extensively reviewed and several important conclusions were reached regarding both the potential and limitations of the computation-assisted modeling of biological systems, and especially complex organisms such as Homo sapiens sapiens(Baianu,1987). Novel approaches to solving the realization problems of Relational Biology models in Complex System Biology are introduced in terms of natural transformations between functors of such molecular categories. Several applications of such natural transformations of functors were then presented to protein biosynthesis, embryogenesis and nuclear transplant experiments. Other possible realizations in Molecular Biology and Relational Biology of Organisms are here suggested in terms of quantum automata models of Quantum Genetics and Interactomics. Future developments of this novel approach are likely to also include: Fuzzy Relations in Biology and Epigenomics, Relational Biology modeling of Complex Immunological and Hormonal regulatory systems, n-categories and Topoi of Lukasiewicz Logic Algebras and Intuitionistic Logic (Heyting) Algebras for modeling nonlinear dynamics and cognitive processes in complex neural networks that are present in the human brain, as well as stochastic modeling of genetic networks in Lukasiewicz Logic Algebras

Can Computer Algebra be Liberated from its Algebraic Yoke ?

So far, the scope of computer algebra has been needlessly restricted to exact algebraic methods. Its possible extension to approximate analytical methods is discussed. The entangled roles of functional analysis and symbolic programming, especially the functional and transformational paradigms, are put forward. In the future, algebraic algorithms could constitute the core of extended symbolic manipulation systems including primitives for symbolic approximations.Comment: 8 pages, 2-column presentation, 2 figure

What is Computational Intelligence and where is it going?

What is Computational Intelligence (CI) and what are its relations with Artificial Intelligence (AI)? A brief survey of the scope of CI journals and books with ``computational intelligence'' in their title shows that at present it is an umbrella for three core technologies (neural, fuzzy and evolutionary), their applications, and selected fashionable pattern recognition methods. At present CI has no comprehensive foundations and is more a bag of tricks than a solid branch of science. The change of focus from methods to challenging problems is advocated, with CI defined as a part of computer and engineering sciences devoted to solution of non-algoritmizable problems. In this view AI is a part of CI focused on problems related to higher cognitive functions, while the rest of the CI community works on problems related to perception and control, or lower cognitive functions. Grand challenges on both sides of this spectrum are addressed

Computational Soundness for Dalvik Bytecode

Automatically analyzing information flow within Android applications that rely on cryptographic operations with their computational security guarantees imposes formidable challenges that existing approaches for understanding an app's behavior struggle to meet. These approaches do not distinguish cryptographic and non-cryptographic operations, and hence do not account for cryptographic protections: f(m) is considered sensitive for a sensitive message m irrespective of potential secrecy properties offered by a cryptographic operation f. These approaches consequently provide a safe approximation of the app's behavior, but they mistakenly classify a large fraction of apps as potentially insecure and consequently yield overly pessimistic results. In this paper, we show how cryptographic operations can be faithfully included into existing approaches for automated app analysis. To this end, we first show how cryptographic operations can be expressed as symbolic abstractions within the comprehensive Dalvik bytecode language. These abstractions are accessible to automated analysis, and they can be conveniently added to existing app analysis tools using minor changes in their semantics. Second, we show that our abstractions are faithful by providing the first computational soundness result for Dalvik bytecode, i.e., the absence of attacks against our symbolically abstracted program entails the absence of any attacks against a suitable cryptographic program realization. We cast our computational soundness result in the CoSP framework, which makes the result modular and composable.Comment: Technical report for the ACM CCS 2016 conference pape