Modular Acquisition and Stimulation System for Timestamp-Driven Neuroscience Experiments

Dedicated systems are fundamental for neuroscience experimental protocols that require timing determinism and synchronous stimuli generation. We developed a data acquisition and stimuli generator system for neuroscience research, optimized for recording timestamps from up to 6 spiking neurons and entirely specified in a high-level Hardware Description Language (HDL). Despite the logic complexity penalty of synthesizing from such a language, it was possible to implement our design in a low-cost small reconfigurable device. Under a modular framework, we explored two different memory arbitration schemes for our system, evaluating both their logic element usage and resilience to input activity bursts. One of them was designed with a decoupled and latency insensitive approach, allowing for easier code reuse, while the other adopted a centralized scheme, constructed specifically for our application. The usage of a high-level HDL allowed straightforward and stepwise code modifications to transform one architecture into the other. The achieved modularity is very useful for rapidly prototyping novel electronic instrumentation systems tailored to scientific research.Comment: Preprint submitted to ARC 2015. Extended: 16 pages, 10 figures. The final publication is available at link.springer.co

Prototype of Fault Adaptive Embedded Software for Large-Scale Real-Time Systems

This paper describes a comprehensive prototype of large-scale fault adaptive embedded software developed for the proposed Fermilab BTeV high energy physics experiment. Lightweight self-optimizing agents embedded within Level 1 of the prototype are responsible for proactive and reactive monitoring and mitigation based on specified layers of competence. The agents are self-protecting, detecting cascading failures using a distributed approach. Adaptive, reconfigurable, and mobile objects for reliablility are designed to be self-configuring to adapt automatically to dynamically changing environments. These objects provide a self-healing layer with the ability to discover, diagnose, and react to discontinuities in real-time processing. A generic modeling environment was developed to facilitate design and implementation of hardware resource specifications, application data flow, and failure mitigation strategies. Level 1 of the planned BTeV trigger system alone will consist of 2500 DSPs, so the number of components and intractable fault scenarios involved make it impossible to design an `expert system' that applies traditional centralized mitigative strategies based on rules capturing every possible system state. Instead, a distributed reactive approach is implemented using the tools and methodologies developed by the Real-Time Embedded Systems group.Comment: 2nd Workshop on Engineering of Autonomic Systems (EASe), in the 12th Annual IEEE International Conference and Workshop on the Engineering of Computer Based Systems (ECBS), Washington, DC, April, 200

Hardware/software co-design of fractal features based fall detection system

Falls are a leading cause of death in older adults and result in high levels of mortality, morbidity and immobility. Fall Detection Systems (FDS) are imperative for timely medical aid and have been known to reduce death rate by 80%. We propose a novel wearable sensor FDS which exploits fractal dynamics of fall accelerometer signals. Fractal dynamics can be used as an irregularity measure of signals and our work shows that it is a key discriminant for classification of falls from other activities of life. We design, implement and evaluate a hardware feature accelerator for computation of fractal features through multi-level wavelet transform on a reconfigurable embedded System on Chip, Zynq device for evaluating wearable accelerometer sensors. The proposed FDS utilises a hardware/software co-design approach with hardware accelerator for fractal features and software implementation of Linear Discriminant Analysis on an embedded ARM core for high accuracy and energy efficiency. The proposed system achieves 99.38% fall detection accuracy, 7.3× speed-up and 6.53× improvements in power consumption, compared to the software only execution with an overall performance per Watt advantage of 47.6×, while consuming low reconfigurable resources at 28.67%

Smart technologies for effective reconfiguration: the FASTER approach

Current and future computing systems increasingly require that their functionality stays flexible after the system is operational, in order to cope with changing user requirements and improvements in system features, i.e. changing protocols and data-coding standards, evolving demands for support of different user applications, and newly emerging applications in communication, computing and consumer electronics. Therefore, extending the functionality and the lifetime of products requires the addition of new functionality to track and satisfy the customers needs and market and technology trends. Many contemporary products along with the software part incorporate hardware accelerators for reasons of performance and power efficiency. While adaptivity of software is straightforward, adaptation of the hardware to changing requirements constitutes a challenging problem requiring delicate solutions. The FASTER (Facilitating Analysis and Synthesis Technologies for Effective Reconfiguration) project aims at introducing a complete methodology to allow designers to easily implement a system specification on a platform which includes a general purpose processor combined with multiple accelerators running on an FPGA, taking as input a high-level description and fully exploiting, both at design time and at run time, the capabilities of partial dynamic reconfiguration. The goal is that for selected application domains, the FASTER toolchain will be able to reduce the design and verification time of complex reconfigurable systems providing additional novel verification features that are not available in existing tool flows

Improving reconfigurable systems reliability by combining periodical test and redundancy techniques: a case study

This paper revises and introduces to the field of reconfigurable computer systems, some traditional techniques used in the fields of fault-tolerance and testing of digital circuits. The target area is that of on-board spacecraft electronics, as this class of application is a good candidate for the use of reconfigurable computing technology. Fault tolerant strategies are used in order for the system to adapt itself to the severe conditions found in space. In addition, the paper describes some problems and possible solutions for the use of reconfigurable components, based on programmable logic, in space applications

Design of Special Function Units in Modern Microprocessors

Today’s computing systems demand high performance for applications such as cloud computing, web-based search engines, network applications, and social media tasks. Such software applications involve an extensive use of hashing and arithmetic operations in their computation. In this thesis, we explore the use of new special function units (SFUs) for modern microprocessors, to accelerate such workloads. First, we design an SFU for hashing. Hashing can reduce the complexity of search and lookup from O(p) to O(p/n), where n bins are used and p items are being processed. In modern microprocessors, hashing is done in software. In our work, we propose a novel hardware hash unit design for use in modern microprocessors. Since the hash unit is designed at the hardware level, several advantages are obtained by our approach. First, a hardware-based hash unit executes a single hash instruction to perform a hash operation. In a software-based hashing in modern microprocessors, a hash operation is compiled into multiple instructions, thereby degrading performance. Second, software-based hashing stores hash data in a DRAM (also, hash operation entries can be stored in one of the cache levels). In a hardware-based hash unit, hash data is stored in a dedicated memory module (a hardware hash table), which improves performance. Third, today’s operating systems execute multiple applications (processes) in parallel, which entail high memory utilization. Hence the operating systems require many context switching between different processes, which results in many cache misses. In a hardware-based hash unit, the cache misses is reduced significantly using the dedicated memory module (hash table). These advantages all reduce the power consumption and increase the overall system performance significantly with a minimal increase in the microprocessor’s die area. We evaluate our hardware-based hash unit and compare its performance with software-based hashing. We start by evaluating our design approach at the micro-architecture level in terms of system performance. After that, we design our approach at the circuit level design to obtain the area overhead. Also, we analyze our design’s power and delay for each hash operation. These results are compared with a traditional hashing implementation. Then, we present an FPGA-based coprocessor for hash unit acceleration, applied to a virus checking application. Second, we present an SFU to speed up arithmetic operations. We call this arithmetic SFU a programmable arithmetic unit (PAU). In modern microprocessors, applications that require heavy arithmetic computations are done in software. To improve the performance for such computations, we present a programmable arithmetic unit (PAU), a partially reconfigurable methodology for arithmetic applications. The PAU consists of a set of IP blocks connected to a reconfigurable FPGA controller via a fast mesh-based interconnect. The IP blocks in the PAU can be any IP block such as adders, subtractors, multipliers, comparators and sign extension units. The PAU can have one or more copies of the same IP block (for example, 5 adders and 7 multipliers). The FPGA controller is an on-chip FPGA-based reconfigurable control fabric. The FPGA controller enables different arithmetic applications to be embedded on the PAU. The FPGA controller is programmed for different applications. The reconfigurable logic is based on a LUT-based design like a traditional FPGA. The FPGA controller and the IP blocks in the PAU communicate via a high speed ring data fabric. In our work, we use the PAU as an SFU in modern microprocessors. We compare the performance of different hardware-based arithmetic applications in the PAU with software-based implementations in modern microprocessors