Order statistics correlation coefficient as a novel association measurement with applications to biosignal analysis

In this paper, we propose a novel correlation coefficient based on order statistics and rearrangement inequality. The proposed coefficient represents a compromise between the Pearson's linear coefficient and the two rank-based coefficients, namely Spearman's rho and Kendall's tau. Theoretical derivations show that our coefficient possesses the same basic properties as the three classical coefficients. Experimental studies based on four models and six biosignals show that our coefficient performs better than the two rank-based coefficients when measuring linear associations; whereas it is well able to detect monotone nonlinear associations like the two rank-based coefficients. Extensive statistical analyses also suggest that our new coefficient has superior anti-noise robustness, small biasedness, high sensitivity to changes in association, accurate time-delay detection ability, fast computational speed, and robustness under monotone nonlinear transformations. © 2007 IEEE.published_or_final_versio

Multi-voxel fMRI analysis using an high throughput grid framework

Mestrado em Engenharia Biomédica - Instrumentação, Sinal e ImagemO presente trabalho apresenta uma nova abordagem à análise de imagens de RMf do cérebro, especificamente a utilização de medidas associativas na análise de séries temporais de RMf. Este tipo específico de análise, computacionalmente intensivo, requer recursos que normalmente não se encontram disponíveis em ambientes clínicos. Redes Grid é um novo paradigma de computação distribuída de elevada performance que pode ser utilizado para potenciar a utilização deste tipo de análise, disponibilizando a capacidade de computação necessária. Implementouse um framework que permite a utilização de uma infraestrutura Grid para correr este tipo de análise de forma transparente, viabilizando a sua utilização em ambientes clínicos, onde o tempo é um factor crítico. ABSTRACT: This work, introduces a new approach to fMRI brain image analysis, namely multivoxel fMRI association analysis. The problem associated with this type of approach is that requires a large computing capacity that is not normally available at clinical sites. To enable this specific type of analysis we are required to use High Performance Computing paradigms. In this context we analysed the use of Grid computing and implemented a framework that allows running the multivoxel fMRI association analysis using a grid infrastructure resources. The use of this framework makes this type of analysis usable in clinical environments where time constraints can have a vital importance

EpiGauss : caracterização espacio-temporal da actividade cerebral em epilepsia

Doutoramento em Engenharia ElectrotécnicaA epilepsia é uma patologia cerebral que afecta cerca de 0,5% da população mundial. Nas epilepsias focais, o principal objectivo clínico é a localização da zona epileptogénica (área responsável pelas crises), uma informação crucial para uma terapêutica adequada. Esta tese é centrada na caracterização da actividade cerebral electromagnética do cérebro epiléptico. As contribuições nesta área, entre a engenharia e neurologia clínica, são em duas direcções. Primeiro, mostramos que os conceitos associados às pontas podem ser imprecisos e não ter uma definição objectiva, tornando necessária uma reformulação de forma a definir uma referência fiável em estudos relacionados com a análise de pontas. Mostramos que as características das pontas em EEG são estatisticamente diferentes das pontas em MEG. Esta constatação leva a concluir que a falta de objectividade na definição de ponta na literatura pode induzir utilizações erradas de conceitos associados ao EEG na análise de MEG. Também verificamos que o uso de conjuntos de detecções de pontas efectuadas por especialistas (MESS) como referência pode fornecer resultados enganadores quando apenas baseado em critérios de consenso clínico, nomeadamente na avaliação da sensibilidade e especificidade de métodos computorizados de detecção de pontas Em segundo lugar, propomos o uso de métodos estatísticos para ultrapassar a falta de precisão e objectividade das definições relacionadas com pontas. Propomos um novo método de neuroimagem suportado na caracterização de geradores electromagnéticos – EpiGauss – baseado na análise individual dos geradores de eventos do EEG que explora as suas estruturas espacio-temporais através da análise de “clusters”. A aplicação de análise de “clusters” à análise geradores de eventos do EEG tem como objectivo usar um método não supervisionado, para encontrar estruturas espacio-temporais dps geradores relevantes. Este método, como processo não supervisionado, é orientado a utilizadores clínicos e apresenta os resultados sob forma de imagens médicas com interpretação similar a outras técnicas de imagiologia cerebral. Com o EpiGauss, o utilizador pode determinar a localização estatisticamente mais provável de geradores, a sua estabilidade espacial e possíveis propagações entre diferente áreas do cérebro. O método foi testado em dois estudos clínicos envolvendo doentes com epilepsia associada aos hamartomas hipotalâmicos e o outro com doentes com diagnóstico de epilepsia occipital. Em ambos os estudos, o EpiGauss foi capaz de identificar a zona epileptogénica clínica, de forma consistente com a história e avaliação clínica dos neurofisiologistas, fornecendo mais informação relativa à estabilidade dos geradores e possíveis percursos de propagação da actividade epileptogénica contribuindo para uma melhor caracterização clínica dos doentes. A conclusão principal desta tese é que o uso de técnicas não supervisionadas, como a análise de “clusters”, associadas as técnicas não-invasivas de EMSI, pode contribuir com um valor acrescido no processo de diagnóstico clínico ao fornecer uma caracterização objectiva e representação visual de padrões complexos espaciotemporais da actividade eléctrica epileptogénica.Epilepsy is a brain pathology that affects 0.5% of the world population. In focal epilepsies, the main clinical objective is the localization of the epileptogenic zone (brain area responsible for the epileptic seizures – EZ), a key information to decide an adequate therapeutic approach. This thesis is centred on electromagnetic activity characterization of the epileptic brain. Our contribution to this boundary area between engineering and clinical neurology is two-folded. First we show that spike related clinical concepts can be unprecise and some do not have objective definitions making necessary a reformulation in order to have a reliable reference in spike related studies. We show that EEG spike wave quantitative features are statistically different from their MEG counterparts. This finding leads to the conclusion that the lack of objective spike feature definitions in the literature can induce the wrong usage of EEG feature definition in MEG analysis. We also show that the use of multi-expert spike selections sets (MESS) as gold standard, although clinically useful, may be misleading whenever defined solely in terms of clinical agreement criteria, namely as references for automatic spike detection algorithms in sensitivity and specificity method analysis. Second, we propose the use of statistical methods to overcome some lack of precision and objectivity in spike related definitions. In this context, we propose a new ElectroMagnetic Source Imaging (EMSI) method – EpiGauss – based on cluster analysis that explores both spatial and temporal information contained in individual events sources analysis characterisation. This automatic cluster method for the analysis of spike related electric generators based in EEG is used to provide an unsupervised tool to find their relevant spatio-temporal structures. This method enables a simple unsupervised procedure aimed for clinical users and presents its results in an intuitive representation similar to other brain imaging techniques. With EpiGauss, the user is able to determine statistically probable source locations, their spatial stability and propagation patterns between different brain areas. The method was tested in two different clinical neurophysiology studies, one with a group of Hypothalamic Hamartomas and another with a group of Occipital Epilepsy patients. In both studies EpiGauss identified the clinical epileptogenic zone, consistent with the clinical background and evaluation of neurophysiologists, providing further information on stability of source locations and their probable propagation pathways that enlarges their clinical interpretation. This thesis main conclusion is that the use of unsupervised techniques, such as clustering, associated with EMSI non-invasive techniques, can bring an added value in clinical diagnosis process by providing objective and visual representation of complex epileptic brain spatio-temporal activity patterns

DYNAMIC SELF-ORGANISED NEURAL NETWORK INSPIRED BY THE IMMUNE ALGORITHM FOR FINANCIAL TIME SERIES PREDICTION AND MEDICAL DATA CLASSIFICATION

Artificial neural networks have been proposed as useful tools in time series analysis in a variety of applications. They are capable of providing good solutions for a variety of problems, including classification and prediction. However, for time series analysis, it must be taken into account that the variables of data are related to the time dimension and are highly correlated. The main aim of this research work is to investigate and develop efficient dynamic neural networks in order to deal with data analysis issues. This research work proposes a novel dynamic self-organised multilayer neural network based on the immune algorithm for financial time series prediction and biomedical signal classification, combining the properties of both recurrent and self-organised neural networks. The first case study that has been addressed in this thesis is prediction of financial time series. The financial time series signal is in the form of historical prices of different companies. The future prediction of price in financial time series enables businesses to make profits by predicting or simply guessing these prices based on some historical data. However, the financial time series signal exhibits a highly random behaviour, which is non-stationary and nonlinear in nature. Therefore, the prediction of this type of time series is very challenging. In this thesis, a number of experiments have been simulated to evaluate the ability of the designed recurrent neural network to forecast the future value of financial time series. The resulting forecast made by the proposed network shows substantial profits on financial historical signals when compared to the self-organised hidden layer inspired by immune algorithm and multilayer perceptron neural networks. These results suggest that the proposed dynamic neural networks has a better ability to capture the chaotic movement in financial signals. The second case that has been addressed in this thesis is for predicting preterm birth and diagnosing preterm labour. One of the most challenging tasks currently facing the healthcare community is the identification of preterm labour, which has important significances for both healthcare and the economy. Premature birth occurs when the baby is born before completion of the 37-week gestation period. Incomplete understanding of the physiology of the uterus and parturition means that premature labour prediction is a difficult task. The early prediction of preterm births could help to improve prevention, through appropriate medical and lifestyle interventions. One promising method is the use of Electrohysterography. This method records the uterine electrical activity during pregnancy. In this thesis, the proposed dynamic neural network has been used for classifying between term and preterm labour using uterine signals. The results indicated that the proposed network generated improved classification accuracy in comparison to the benchmarked neural network architectures