Unsupervised Graph-based Rank Aggregation for Improved Retrieval

This paper presents a robust and comprehensive graph-based rank aggregation approach, used to combine results of isolated ranker models in retrieval tasks. The method follows an unsupervised scheme, which is independent of how the isolated ranks are formulated. Our approach is able to combine arbitrary models, defined in terms of different ranking criteria, such as those based on textual, image or hybrid content representations. We reformulate the ad-hoc retrieval problem as a document retrieval based on fusion graphs, which we propose as a new unified representation model capable of merging multiple ranks and expressing inter-relationships of retrieval results automatically. By doing so, we claim that the retrieval system can benefit from learning the manifold structure of datasets, thus leading to more effective results. Another contribution is that our graph-based aggregation formulation, unlike existing approaches, allows for encapsulating contextual information encoded from multiple ranks, which can be directly used for ranking, without further computations and post-processing steps over the graphs. Based on the graphs, a novel similarity retrieval score is formulated using an efficient computation of minimum common subgraphs. Finally, another benefit over existing approaches is the absence of hyperparameters. A comprehensive experimental evaluation was conducted considering diverse well-known public datasets, composed of textual, image, and multimodal documents. Performed experiments demonstrate that our method reaches top performance, yielding better effectiveness scores than state-of-the-art baseline methods and promoting large gains over the rankers being fused, thus demonstrating the successful capability of the proposal in representing queries based on a unified graph-based model of rank fusions

Identification of functionally related enzymes by learning-to-rank methods

Enzyme sequences and structures are routinely used in the biological sciences as queries to search for functionally related enzymes in online databases. To this end, one usually departs from some notion of similarity, comparing two enzymes by looking for correspondences in their sequences, structures or surfaces. For a given query, the search operation results in a ranking of the enzymes in the database, from very similar to dissimilar enzymes, while information about the biological function of annotated database enzymes is ignored. In this work we show that rankings of that kind can be substantially improved by applying kernel-based learning algorithms. This approach enables the detection of statistical dependencies between similarities of the active cleft and the biological function of annotated enzymes. This is in contrast to search-based approaches, which do not take annotated training data into account. Similarity measures based on the active cleft are known to outperform sequence-based or structure-based measures under certain conditions. We consider the Enzyme Commission (EC) classification hierarchy for obtaining annotated enzymes during the training phase. The results of a set of sizeable experiments indicate a consistent and significant improvement for a set of similarity measures that exploit information about small cavities in the surface of enzymes

A semi-supervised learning algorithm for relevance feedback and collaborative image retrieval

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)The interaction of users with search services has been recognized as an important mechanism for expressing and handling user information needs. One traditional approach for supporting such interactive search relies on exploiting relevance feedbacks (RF) in the searching process. For large-scale multimedia collections, however, the user efforts required in RF search sessions is considerable. In this paper, we address this issue by proposing a novel semi-supervised approach for implementing RF-based search services. In our approach, supervised learning is performed taking advantage of relevance labels provided by users. Later, an unsupervised learning step is performed with the objective of extracting useful information from the intrinsic dataset structure. Furthermore, our hybrid learning approach considers feedbacks of different users, in collaborative image retrieval (CIR) scenarios. In these scenarios, the relationships among the feedbacks provided by different users are exploited, further reducing the collective efforts. Conducted experiments involving shape, color, and texture datasets demonstrate the effectiveness of the proposed approach. Similar results are also observed in experiments considering multimodal image retrieval tasks.The interaction of users with search services has been recognized as an important mechanism for expressing and handling user information needs. One traditional approach for supporting such interactive search relies on exploiting relevance feedbacks (RF) i2015FAPESP - FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULOCNPQ - CONSELHO NACIONAL DE DESENVOLVIMENTO CIENTÍFICO E TECNOLÓGICOCAPES - COORDENAÇÃO DE APERFEIÇOAMENTO DE PESSOAL DE NÍVEL SUPERIORFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)FAPESP [2013/08645-0, 2013/50169-1]CNPq [306580/2012-8, 484254/2012-0]2013/08645-0; 2013/50169-1306580/2012-8;484254/2012-0SEM INFORMAÇÃ

Local selection of features and its applications to image search and annotation

In multimedia applications, direct representations of data objects typically involve hundreds or thousands of features. Given a query object, the similarity between the query object and a database object can be computed as the distance between their feature vectors. The neighborhood of the query object consists of those database objects that are close to the query object. The semantic quality of the neighborhood, which can be measured as the proportion of neighboring objects that share the same class label as the query object, is crucial for many applications, such as content-based image retrieval and automated image annotation. However, due to the existence of noisy or irrelevant features, errors introduced into similarity measurements are detrimental to the neighborhood quality of data objects. One way to alleviate the negative impact of noisy features is to use feature selection techniques in data preprocessing. From the original vector space, feature selection techniques select a subset of features, which can be used subsequently in supervised or unsupervised learning algorithms for better performance. However, their performance on improving the quality of data neighborhoods is rarely evaluated in the literature. In addition, most traditional feature selection techniques are global, in the sense that they compute a single set of features across the entire database. As a consequence, the possibility that the feature importance may vary across different data objects or classes of objects is neglected. To compute a better neighborhood structure for objects in high-dimensional feature spaces, this dissertation proposes several techniques for selecting features that are important to the local neighborhood of individual objects. These techniques are then applied to image applications such as content-based image retrieval and image label propagation. Firstly, an iterative K-NN graph construction method for image databases is proposed. A local variant of the Laplacian Score is designed for the selection of features for individual images. Noisy features are detected and sparsified iteratively from the original standardized feature vectors. This technique is incorporated into an approximate K-NN graph construction method so as to improve the semantic quality of the graph. Secondly, in a content-based image retrieval system, a generalized version of the Laplacian Score is used to compute different feature subspaces for images in the database. For online search, a query image is ranked in the feature spaces of database images. Those database images for which the query image is ranked highly are selected as the query results. Finally, a supervised method for the local selection of image features is proposed, for refining the similarity graph used in an image label propagation framework. By using only the selected features to compute the edges leading from labeled image nodes to unlabeled image nodes, better annotation accuracy can be achieved. Experimental results on several datasets are provided in this dissertation, to demonstrate the effectiveness of the proposed techniques for the local selection of features, and for the image applications under consideration