15,606 research outputs found
Geometry-Oblivious FMM for Compressing Dense SPD Matrices
We present GOFMM (geometry-oblivious FMM), a novel method that creates a
hierarchical low-rank approximation, "compression," of an arbitrary dense
symmetric positive definite (SPD) matrix. For many applications, GOFMM enables
an approximate matrix-vector multiplication in or even time,
where is the matrix size. Compression requires storage and work.
In general, our scheme belongs to the family of hierarchical matrix
approximation methods. In particular, it generalizes the fast multipole method
(FMM) to a purely algebraic setting by only requiring the ability to sample
matrix entries. Neither geometric information (i.e., point coordinates) nor
knowledge of how the matrix entries have been generated is required, thus the
term "geometry-oblivious." Also, we introduce a shared-memory parallel scheme
for hierarchical matrix computations that reduces synchronization barriers. We
present results on the Intel Knights Landing and Haswell architectures, and on
the NVIDIA Pascal architecture for a variety of matrices.Comment: 13 pages, accepted by SC'1
Recent Advances in Graph Partitioning
We survey recent trends in practical algorithms for balanced graph
partitioning together with applications and future research directions
An Octree-Based Approach towards Efficient Variational Range Data Fusion
Volume-based reconstruction is usually expensive both in terms of memory
consumption and runtime. Especially for sparse geometric structures, volumetric
representations produce a huge computational overhead. We present an efficient
way to fuse range data via a variational Octree-based minimization approach by
taking the actual range data geometry into account. We transform the data into
Octree-based truncated signed distance fields and show how the optimization can
be conducted on the newly created structures. The main challenge is to uphold
speed and a low memory footprint without sacrificing the solutions' accuracy
during optimization. We explain how to dynamically adjust the optimizer's
geometric structure via joining/splitting of Octree nodes and how to define the
operators. We evaluate on various datasets and outline the suitability in terms
of performance and geometric accuracy.Comment: BMVC 201
Accurate and efficient algorithms for boundary element methods in electromagnetic scattering: a tribute to the work of F. Olyslager
Boundary element methods (BEMs) are an increasingly popular approach to model electromagnetic scattering both by perfect conductors and dielectric objects. Several mathematical, numerical, and computational techniques pullulated from the research into BEMs, enhancing its efficiency and applicability. In designing a viable implementation of the BEM, both theoretical and practical aspects need to be taken into account. Theoretical aspects include the choice of an integral equation for the sought after current densities on the geometry's boundaries and the choice of a discretization strategy (i.e. a finite element space) for this equation. Practical aspects include efficient algorithms to execute the multiplication of the system matrix by a test vector (such as a fast multipole method) and the parallelization of this multiplication algorithm that allows the distribution of the computation and communication requirements between multiple computational nodes. In honor of our former colleague and mentor, F. Olyslager, an overview of the BEMs for large and complex EM problems developed within the Electromagnetics Group at Ghent University is presented. Recent results that ramified from F. Olyslager's scientific endeavors are included in the survey
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Improving Performance of M-to-N Processing and Data Redistribution in In Transit Analysis and Visualization
In an in transit setting, a parallel data producer, such as a numerical simulation, runs on one set of ranks M, while a data consumer, such as a parallel visualization application, runs on a different set of ranks N. One of the central challenges in this in transit setting is to determine the mapping of data from the set of M producer ranks to the set of N consumer ranks. This is a challenging problem for several reasons, such as the producer and consumer codes potentially having different scaling characteristics and different data models. The resulting mapping from M to N ranks can have a significant impact on aggregate application performance. In this work, we present an approach for performing this M-to-N mapping in a way that has broad applicability across a diversity of data producer and consumer applications. We evaluate its design and performance with
a study that runs at high concurrency on a modern HPC platform. By leveraging design characteristics, which facilitate an “intelligent” mapping from M-to-N, we observe significant performance gains are possible in terms of several different metrics, including time-to-solution and amount of data moved
Efficient computation of partition of unity interpolants through a block-based searching technique
In this paper we propose a new efficient interpolation tool, extremely
suitable for large scattered data sets. The partition of unity method is used
and performed by blending Radial Basis Functions (RBFs) as local approximants
and using locally supported weight functions. In particular we present a new
space-partitioning data structure based on a partition of the underlying
generic domain in blocks. This approach allows us to examine only a reduced
number of blocks in the search process of the nearest neighbour points, leading
to an optimized searching routine. Complexity analysis and numerical
experiments in two- and three-dimensional interpolation support our findings.
Some applications to geometric modelling are also considered. Moreover, the
associated software package written in \textsc{Matlab} is here discussed and
made available to the scientific community
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