Effects of missing data on heart rate variability metrics

Heart rate variability (HRV) has been studied for decades in clinical environments. Currently, the exponential growth of wearable devices in health monitoring is leading to new challenges that need to be solved. These devices have relatively poor signal quality and are affected by numerous motion artifacts, with data loss being the main stumbling block for their use in HRV analysis. In the present paper, it is shown how data loss affects HRV metrics in the time domain and frequency domain and Poincaré plots. A gap-filling method is proposed and compared to other existing approaches to alleviate these effects, both with simulated (16 subjects) and real (20 subjects) missing data. Two different data loss scenarios have been simulated: (i) scattered missing beats, related to a low signal to noise ratio; and (ii) bursts of missing beats, with the most common due to motion artifacts. In addition, a real database of photoplethysmography-derived pulse detection series provided by Apple Watch during a protocol including relax and stress stages is analyzed. The best correction method and maximum acceptable missing beats are given. Results suggest that correction without gap filling is the best option for the standard deviation of the normal-to-normal intervals (SDNN), root mean square of successive differences (RMSSD) and Poincaré plot metrics in datasets with bursts of missing beats predominance (p<0.05), whereas they benefit from gap-filling approaches in the case of scattered missing beats (p<0.05). Gap-filling approaches are also the best for frequency-domain metrics (p<0.05). The findings of this work are useful for the design of robust HRV applications depending on missing data tolerance and the desired HRV metrics

Atrial Fibrillation Prediction from Critically Ill Sepsis Patients

Sepsis is defined by life-threatening organ dysfunction during infection and is the leading cause of death in hospitals. During sepsis, there is a high risk that new onset of atrial fibrillation (AF) can occur, which is associated with significant morbidity and mortality. Consequently, early prediction of AF during sepsis would allow testing of interventions in the intensive care unit (ICU) to prevent AF and its severe complications. In this paper, we present a novel automated AF prediction algorithm for critically ill sepsis patients using electrocardiogram (ECG) signals. From the heart rate signal collected from 5-min ECG, feature extraction is performed using the traditional time, frequency, and nonlinear domain methods. Moreover, variable frequency complex demodulation and tunable Q-factor wavelet-transform-based time-frequency methods are applied to extract novel features from the heart rate signal. Using a selected feature subset, several machine learning classifiers, including support vector machine (SVM) and random forest (RF), were trained using only the 2001 Computers in Cardiology data set. For testing the proposed method, 50 critically ill ICU subjects from the Medical Information Mart for Intensive Care (MIMIC) III database were used in this study. Using distinct and independent testing data from MIMIC III, the SVM achieved 80% sensitivity, 100% specificity, 90% accuracy, 100% positive predictive value, and 83.33% negative predictive value for predicting AF immediately prior to the onset of AF, while the RF achieved 88% AF prediction accuracy. When we analyzed how much in advance we can predict AF events in critically ill sepsis patients, the algorithm achieved 80% accuracy for predicting AF events 10 min early. Our algorithm outperformed a state-of-the-art method for predicting AF in ICU patients, further demonstrating the efficacy of our proposed method. The annotations of patients\u27 AF transition information will be made publicly available for other investigators. Our algorithm to predict AF onset is applicable for any ECG modality including patch electrodes and wearables, including Holter, loop recorder, and implantable devices

Non-invasive techniques for respiratory information extraction based on pulse photoplethysmogram and electrocardiogram

El objetivo principal de esta tesis es el desarrollo de métodos no invasivos para la extracción de información respiratoria a partir de dos señales biomédicas ampliamente utilizadas en la rutina clínica: el electrocardiograma (ECG) y la señal fotopletismográfica de pulso (PPG). La motivación de este estudio es la conveniencia de monitorizar información respiratoria a partir de dispositivos no invasivos que permita sustituir las técnicas actuales que podrían interferir con la respiración natural y que presentan inconvenientes en algunas aplicaciones como la prueba de esfuerzo y los estudios del sueño. Además, si estos dispositivos no invasivos son los ya utilizados en la rutina clínica, la información respiratoria extraída de ellos representa un valor añadido que permite tener una visión más completa del paciente. DESARROLLO TEÓRICO Esta tesis se divide en 6 capítulos. El Capítulo 1 introduce la problemática, motivaciones y objetivos del estudio. También introduce el origen fisiológico de las señales estudiadas ECG y PPG, y cómo y por qué tienen información autonómica y respiratoria que se puede extraer de ellas. El Capítulo 2 aborda la obtención de información respiratoria a partir del ECG. Se han propuesto varios métodos para la obtención de la respiración a partir del ECG (EDR, del inglés ¿ECG derived respiration?). Su rendimiento se suele ver muy afectado en entornos altamente no estacionarios y ruidosos como la prueba de esfuerzo. No obstante, se han propuesto algunas alternativas, como una basada en el ángulo de rotación del eje eléctrico (obtenido del ECG), que es el que mejor funciona en prueba de esfuerzo según nuestros conocimientos. Este método requiere de tres derivaciones ortogonales y es muy dependiente de cada una de ellas, i.e., el método no es aplicable o su rendimiento se reduce significativamente si hay algún problema en alguna de las derivaciones requeridas. En el Capítulo 2 se propone un método EDR nuevo basado en las pendientes del QRS y el ángulo de la onda R. El Capítulo 3 aborda a obtención de información respiratoria a partir de la señal PPG. Se propone un método nuevo para obtener la tasa respiratoria a partir de la señal PPG. Explota una modulación respiratoria en la variabilidad de anchura de pulso (PWV) relacionada con la velocidad y dispersión de la onda de pulso. El Capítulo 4 aborda la extracción de información respiratoria a partir de señales PPG registradas con smarthpones (SCPPG), mediante la adaptación de los métodos basados en la señal PPG presentados en el Capítulo 3. En el Capítulo 5 se propone un método para el diagnóstico del síndrome de apnea obstructiva del sueño (OSAS) en niños basado únicamente en la señal PPG. El OSAS es una disfunción relacionada con la respiración y el sueño que se diagnostica mediante polisomnografía (PSG). La PSG es el registro nocturno de muchas señales durante el sueño, siendo muy difícil de aplicar en entornos ambulatorios. El método que presenta esta tesis está enfocado a diagnosticar el OSAS en niños utilizando únicamente la señal PPG que permitiría considerar un diagnóstico ambulatorio con sus ventajas económicas y sociales. Finalmente, el Capítulo 6 resume las contribuciones originales y las conclusiones principales de esta tesis, y propone posibles extensiones del trabajo. CONCLUSIÓN El método presentado en el Capítulo 2 para estimar la tasa respiratoria a partir de las pendientes del complejo QRS y el ángulo de la onda R en el ECG demostró ser robusto en entornos altamente no estacionarios y ruidosos y por tanto ser aplicable durante ejercicio incluyendo entrenamiento deportivo. Además, es independiente de un conjunto específico de derivaciones y, por tanto, un problema en alguna de ellas no implica una reducción considerable del rendimiento. El método presentado en el Capítulo 3 para estimar la tasa respiratoria a partir de la PWV extraída de la señal PPG está mucho menos afectada por el tono simpático que otros métodos presentados en la literatura que suelen basarse en la amplitud y/o la tasa de pulso. Esto permite una mayor precisión que otros métodos basados en PPG. Además, se propone un método para combinar información de diferentes señales respiratorias, y se utiliza para estimar la tasa respiratoria a partir de la PWV en combinación con otros métodos basados en la señal PPG, mejorando la precisión de la estimación incluso en comparación con otros métodos en la literatura que requieren el ECG o la presión sanguínea. Los métodos propuestos en el Capítulo 4 para estimar la tasa respiratoria mediante señales SCPPG estimaron de forma precisa la tasa respiratoria en sus rangos espontáneos habituales (0.2-0.4 Hz) e incluso a tasas más altas (hasta 0.5 Hz o 0.6 Hz, dependiendo del dispositivo utilizado). El único requerimiento es que el smartphone tenga un luz tipo flash y una cámara para grabar una yema del dedo sobre ella. La popularidad de los smartphones los convierte en dispositivos de acceso y aceptación r¿apidos. Así, para la población general es potencialmente aceptable un método que funciona en smartphones, pudiendo facilitar la medida de algunas constantes vitales utilizando solo la yema del dedo. El método presentado en el Capítulo 5 para el diagnóstico del OSAS en niños a partir de la PPG obtuvo una precisión suficiente para la clínica, aunque antes de ser aplicado en dicho entorno, el método debería ser validado en una base de datos más grande.The main objective of this thesis is to develop non-invasive methods for respiration information extraction from two biomedical signals which are widely adopted in clinical routine: the electrocardiogram (ECG) and the pulse photoplethysmographic (PPG) signal. This study is motivated by the desirability of monitoring respiratory information from non-invasive devices allowing to substitute the current respiration-monitoring techniques which may interfere with natural breathing and which are unmanageable in some applications such as stress test or sleep studies. Furthermore, if these noninvasive devices are those already used in the clinical routine, the respiratory information obtained from them represents an added value which allows a more complete overview of the patient status. This thesis is divided into 6 chapters. Chapter 1 of this thesis introduces the problematic, motivations and objectives of this study. It also introduces the physiological origin of studied ECG and PPG signals, and why and how they carry autonomic- and respiration-related information which can be extracted from them. Chapter 2 of this thesis addresses the derivation of respiratory information from ECG signal. Several ECG derived respiration (EDR) methods have been presented in literature. Their performance usually decrease considerably in highly non-stationary and noisy environments such as stress test. However, some alternatives aimed to this kind of environments have been presented, such as one based on electrical axis rotation angles (obtained from the ECG), which to the best of our knowledge was the best suited for stress test. This method requires three orthogonal leads, and it is very dependent on each one of those leads, i.e., the performance of the method is significantly decreased if there is any problem at any one of the required leads. A novel EDR method based on QRS slopes and R-wave angle is presented in this thesis. The proposed method demonstrated to be robust in highly non-stationary and noisy environments and so to be applicable to exercise conditions including sports training. Furthermore, it is independent on a specific lead set, and so, a problem at any lead do not imply a significantly reduction of the performance. Chapter 3 addresses the derivation of respiratory information from PPG signals. A novel method for deriving respiratory rate from PPG signal is presented. It exploits respiration-related modulations in pulse width variability (PWV) which is related to pulse wave velocity and dispersion. The proposed method is much less affected by the sympathetic tone than other methods in literature which are usually based on pulses amplitude and/or rate. This leads to highest accuracy than other PPG-based method. Furthermore, a method for combining information from several respiratory signals was developed and used to obtain a respiratory rate estimation from the proposed PWV-based in combination with other known PPG-based methods, improving the accuracy of the estimation and outperforming other methods in literature which involve ECG or BP recording. Chapter 4 addresses the derivation of respiratory information from smartphone- camera-acquired-PPG (SCPPG) signals by adapting the methods for deriving respiratory rate from PPG signal presented in Chapter 3. The proposed method accurately estimates respiratory rate from SCPPG signals at its normal spontaneous ranges (0.2-0.4 Hz) and even at higher rates (up to 0.5 Hz or 0.6 Hz, depending on the used device). The only requirement is that these smartphones and tablets contain a flashlight and a video camera to image a fingertip pressed to it. As smartphones and tablets have become common, they meet the criteria of ready access and acceptance. Hence, a mobile phone/tablet approach has the potential to be widely-accepted by the general population and can facilitate the capability to measure some of the vital signs using only fingertip of the subject. Chapter 5 of this thesis proposes a methodology for obstructive sleep apnea syndrome (OSAS) screening in children just based on PPG signal. OSAS is a sleep-respiration-related dysfunction for which polysomnography (PSG) is the gold standard for diagnosis. PSG consists of overnight recording of many signals during sleep, therefore, it is quite involved and difficult to use in ambulatory scenario. The method presented in this thesis is aimed to diagnose the OSAS in children based just on PPG signal which would allow us to consider an ambulatory diagnosis with both its social and economic advantages. Finally, Chapter 6 summarizes the original contributions and main conclusions of the thesis, and proposes possible extensions of the work

Motion-resilient Heart Rate Monitoring with In-ear Microphones

With the soaring adoption of in-ear wearables, the research community has started investigating suitable in-ear heart rate (HR) detection systems. HR is a key physiological marker of cardiovascular health and physical fitness. Continuous and reliable HR monitoring with wearable devices has therefore gained increasing attention in recent years. Existing HR detection systems in wearables mainly rely on photoplethysmography (PPG) sensors, however, these are notorious for poor performance in the presence of human motion. In this work, leveraging the occlusion effect that can enhance low-frequency bone-conducted sounds in the ear canal, we investigate for the first time \textit{in-ear audio-based motion-resilient} HR monitoring. We first collected the HR-induced sound in the ear canal leveraging an in-ear microphone under stationary and three different activities (i.e., walking, running, and speaking). Then, we devise a novel deep learning based motion artefact (MA) mitigation framework to denoise the in-ear audio signals, followed by an HR estimation algorithm to extract HR. With data collected from 20 subjects over four activities, we demonstrate that hEARt, our end-to-end approach, achieves a mean absolute error (MAE) of 5.46$\pm$6.50BPM, 12.34$\pm$9.24BPM, 14.22$\pm$10.69BPM and 15.44$\pm$11.43BPM for stationary, walking, running and speaking, respectively, opening the door to a new non-invasive and affordable HR monitoring with usable performance for daily activities. Not only does the performance hEARt outperform that of previous in-ear HR monitoring work, but is comparable (and even better whenever full-body motion is concerned) to that reported by in-ear PPG works

Acoustic sensing as a novel approach for cardiovascular monitoring at the wrist

Cardiovascular diseases are the number one cause of deaths globally. An increased cardiovascular risk can be detected by a regular monitoring of the vital signs including the heart rate, the heart rate variability (HRV) and the blood pressure. For a user to undergo continuous vital sign monitoring, wearable systems prove to be very useful as the device can be integrated into the user's lifestyle without affecting the daily activities. However, the main challenge associated with the monitoring of these cardiovascular parameters is the requirement of different sensing mechanisms at different measurement sites. There is not a single wearable device that can provide sufficient physiological information to track the vital signs from a single site on the body. This thesis proposes a novel concept of using acoustic sensing over the radial artery to extract cardiac parameters for vital sign monitoring. A wearable system consisting of a microphone is designed to allow the detection of the heart sounds together with the pulse wave, an attribute not possible with existing wrist-based sensing methods. Methods: The acoustic signals recorded from the radial artery are a continuous reflection of the instantaneous cardiac activity. These signals are studied and characterised using different algorithms to extract cardiovascular parameters. The validity of the proposed principle is firstly demonstrated using a novel algorithm to extract the heart rate from these signals. The algorithm utilises the power spectral analysis of the acoustic pulse signal to detect the S1 sounds and additionally, the K-means method to remove motion artifacts for an accurate heartbeat detection. The HRV in the short-term acoustic recordings is found by extracting the S1 events using the relative information between the short- and long-term energies of the signal. The S1 events are localised using three different characteristic points and the best representation is found by comparing the instantaneous heart rate profiles. The possibility of measuring the blood pressure using the wearable device is shown by recording the acoustic signal under the influence of external pressure applied on the arterial branch. The temporal and spectral characteristics of the acoustic signal are utilised to extract the feature signals and obtain a relationship with the systolic blood pressure (SBP) and diastolic blood pressure (DBP) respectively. Results: This thesis proposes three different algorithms to find the heart rate, the HRV and the SBP/ DBP readings from the acoustic signals recorded at the wrist. The results obtained by each algorithm are as follows: 1. The heart rate algorithm is validated on a dataset consisting of 12 subjects with a data length of 6 hours. The results demonstrate an accuracy of 98.78%, mean absolute error of 0.28 bpm, limits of agreement between -1.68 and 1.69 bpm, and a correlation coefficient of 0.998 with reference to a state-of-the-art PPG-based commercial device. A high statistical agreement between the heart rate obtained from the acoustic signal and the photoplethysmography (PPG) signal is observed. 2. The HRV algorithm is validated on the short-term acoustic signals of 5-minutes duration recorded from each of the 12 subjects. A comparison is established with the simultaneously recorded electrocardiography (ECG) and PPG signals respectively. The instantaneous heart rate for all the subjects combined together achieves an accuracy of 98.50% and 98.96% with respect to the ECG and PPG signals respectively. The results for the time-domain and frequency-domain HRV parameters also demonstrate high statistical agreement with the ECG and PPG signals respectively. 3. The algorithm proposed for the SBP/ DBP determination is validated on 104 acoustic signals recorded from 40 adult subjects. The experimental outputs when compared with the reference arm- and wrist-based monitors produce a mean error of less than 2 mmHg and a standard deviation of error around 6 mmHg. Based on these results, this thesis shows the potential of this new sensing modality to be used as an alternative, or to complement existing methods, for the continuous monitoring of heart rate and HRV, and spot measurement of the blood pressure at the wrist.Open Acces

Autonomic activity in Gulf War veterans using heart rate and systolic blood pressure variability

Heart rate variability (HRV) describes variations of heart rate and is attributed to cyclic fluctuations in autonomic tone. The different methods of heart rate variability analysis allow for a non-invasive assessment of autonomic activity. This study analyzes the heart rate variability through both frequency domain methods and joint time-frequency domain methods which were executed through the LabVJEW graphical programming language. These algorithms were utilized to assess autonomic nervous system activity in Gulf War veterans with no health complaints versus Gulf War veterans with chronic fatigue syndrome. The heart rate variability analysis was obtained from acquired measurements of heart rate and blood pressure during periods of steady-state supine and standing positions. The subject populations as well as the physiological signals utilized in this study were obtained from the East Orange DVA Medical Center. The results of this study indicate that there is no significant difference (p\u3c.05) in autonomic nervous system activity, as assessed with low frequency/high frequency ratios, between Gulf War veterans with no health complaints versus Gulf War veterans with chronic fatigue syndrome. The results also indicate that there is no significant difference (p\u3c.05) in the index of autonomic balance yielded from each of the LF/HF ratios obtained from the heart rate and blood pressure variabilities, respectively, versus the LF{BP}/HF{ECG}ratio

Robust Algorithms for Unattended Monitoring of Cardiovascular Health

Cardiovascular disease is the leading cause of death in the United States. Tracking daily changes in one’s cardiovascular health can be critical in diagnosing and managing cardiovascular disease, such as heart failure and hypertension. A toilet seat is the ideal device for monitoring parameters relating to a subject’s cardiac health in his or her home, because it is used consistently and requires no change in daily habit. The present work demonstrates the ability to accurately capture clinically relevant ECG metrics, pulse transit time based blood pressures, and other parameters across subjects and physiological states using a toilet seat-based cardiovascular monitoring system, enabled through advanced signal processing algorithms and techniques. The algorithms described herein have been designed for use with noisy physiologic signals measured at non-standard locations. A key component of these algorithms is the classification of signal quality, which allows automatic rejection of noisy segments before feature delineation and interval extractions. The present delineation algorithms have been designed to work on poor quality signals while maintaining the highest possible temporal resolution. When validated on standard databases, the custom QRS delineation algorithm has best-in-class sensitivity and precision, while the photoplethysmogram delineation algorithm has best-in-class temporal resolution. Human subject testing on normative and heart failure subjects is used to evaluate the efficacy of the proposed monitoring system and algorithms. Results show that the accuracy of the measured heart rate and blood pressure are well within the limits of AAMI standards. For the first time, a single device is capable of monitoring long-term trends in these parameters while facilitating daily measurements that are taken at rest, prior to the consumption of food and stimulants, and at consistent times each day. This system has the potential to revolutionize in-home cardiovascular monitoring

The Best Self Visualization Method: Clinical Implications and Physiological Correlates

The focus of this study was to evaluate the psychological and psychosocial factors of a novel and composite meditation–visualization practice known as the best self visualization method (BSM). The researcher adapted and modified the BSM to work within a brief 2-week, two-session intervention period. The aim of the study was to evaluate the effects on psychopathology (GAD, PHQ), resilience (PHQ, GAD, Gratitude, Compassion, DSES, Trust, Personal Growth, Mindfulness, and Social Connection), and bio-physiological changes related to EEG spectral power, coherence, and heart rate variability (BPM-Coherence). A total of 66 participants were randomized into active meditation control (n = 35) and BSM (n = 31) intervention groups. Data analysis revealed significant effects for GAD in favor of BSM psychopathology attenuation (U = 316.5, z = -1.62, p ≤ .05) as well as for the PHQ (U = 321.5, z = -1.54, p = .06). Individual t tests revealed a much more robust effect. There were no significant differences for the other scales measured except for interpersonal trust, which had a stronger effect for the BSM group, t(23) = -1.90, p = .04. For EEG and HRV data, results showed the BSM elicited significant changes in parietal gamma spectral power (F[2, 15] = 6.34, p = .010), parietal alpha blocking (F[1, 15] = 5.14, p = .039), and heart rate coherence achievement (t[28] = 1.97, p = .03), as well as demonstrated a heart rate increase trend. Paradoxically, the BSM’s bio-physiological profile was more “activating” when compared to the control, indicating psychopathology attenuation was not related necessarily to a relaxation response

Bottom-up design of artificial neural network for single-lead electrocardiogram beat and rhythm classification

Performance improvement in computerized Electrocardiogram (ECG) classification is vital to improve reliability in this life-saving technology. The non-linearly overlapping nature of the ECG classification task prevents the statistical and the syntactic procedures from reaching the maximum performance. A new approach, a neural network-based classification scheme, has been implemented in clinical ECG problems with much success. The focus, however, has been on narrow clinical problem domains and the implementations lacked engineering precision. An optimal utilization of frequency information was missing. This dissertation attempts to improve the accuracy of neural network-based single-lead (lead-II) ECG beat and rhythm classification. A bottom-up approach defined in terms of perfecting individual sub-systems to improve the over all system performance is used. Sub-systems include pre-processing, QRS detection and fiducial point estimations, feature calculations, and pattern classification. Inaccuracies in time-domain fiducial point estimations are overcome with the derivation of features in the frequency domain. Feature extraction in frequency domain is based on a spectral estimation technique (combination of simulation and subtraction of a normal beat). Auto-regressive spectral estimation methods yield a highly sensitive spectrum, providing several local features with information on beat classes like flutter, fibrillation, and noise. A total of 27 features, including 16 in time domain and 11 in frequency domain are calculated. The entire data and problem are divided into four major groups, each group with inter-related beat classes. Classification of each group into related sub-classes is performed using smaller feed-forward neural networks. Input feature sub-set and the structure of each network are optimized using an iterative process. Optimal implementations of feed-forward neural networks provide high accuracy in beat classification. Associated neural networks are used for the more deterministic rhythm-classification task. An accuracy of more than 85% is achieved for all 13 classes included in this study. The system shows a graceful degradation in performance with increasing noise, as a result of the noise consideration in the design of every sub-system. Results indicate a neural network-based bottom-up design of single-lead ECG classification is able to provide very high accuracy, even in the presence of noise, flutter, and fibrillation