Towards persistent resource identification with the uniform resource name

The exponential growth of the Internet, and the subsequent reliance on the resources it connects, has exposed a clear need for an Internet identifier which remains accessible over time. Such identifiers have been dubbed persistent identifiers owing to the promise of reliability they imply. Persistent naming systems exist at present, however it is the resolution of these systems into what Kunze, (2003) calls persistent actionable identifiers which is the focus of this work. Actionable identifiers can be thought of as identifiers which are accessible in a simple fashion such as through a web browser or through a specific application. This thesis identifies the Uniform Resource Name (URN) as an appropriate identification scheme for persistent resource naming. Evaluation of current URN systems finds that no practical means of global URN resolution is currently available. Two ,new approaches to URN resolution, unique in their use of the Domain Name System (DNS) are introduced. The proposed designs are assessed according to their Usability, Security and Evolution and an implementation described for an example URN namespace of language identifiers

BioGUID: resolving, discovering, and minting identifiers for biodiversity informatics

Background: Linking together the data of interest to biodiversity researchers (including specimen records, images, taxonomic names, and DNA sequences) requires services that can mint, resolve, and discover globally unique identifiers (including, but not limited to, DOIs, HTTP URIs, and LSIDs). Results: BioGUID implements a range of services, the core ones being an OpenURL resolver for bibliographic resources, and a LSID resolver. The LSID resolver supports Linked Data-friendly resolution using HTTP 303 redirects and content negotiation. Additional services include journal ISSN look-up, author name matching, and a tool to monitor the status of biodiversity data providers. Conclusion: BioGUID is available at http://bioguid.info/. Source code is available from http://code.google.com/p/bioguid/

Biodiversity informatics: the challenge of linking data and the role of shared identifiers

A major challenge facing biodiversity informatics is integrating data stored in widely distributed databases. Initial efforts have relied on taxonomic names as the shared identifier linking records in different databases. However, taxonomic names have limitations as identifiers, being neither stable nor globally unique, and the pace of molecular taxonomic and phylogenetic research means that a lot of information in public sequence databases is not linked to formal taxonomic names. This review explores the use of other identifiers, such as specimen codes and GenBank accession numbers, to link otherwise disconnected facts in different databases. The structure of these links can also be exploited using the PageRank algorithm to rank the results of searches on biodiversity databases. The key to rich integration is a commitment to deploy and reuse globally unique, shared identifiers (such as DOIs and LSIDs), and the implementation of services that link those identifiers

Recursively invoking Linnaeus: A Taxonomy for Naming Systems

Naming is a central element of a distributed or network system design. Appropriate design choices are central. This paper explores a taxonomy of naming systems, and engineering tradeoffs as an aid to the namespace designer. The three orthogonal components of the taxonomy are the characteristics of the namespace itself, name assignment, and name resolution. Within each of these, we explore a number of distinct characteristics. The position of this paper is that engineering design of naming systems should be informed by the possibilities and tradeoffs that those possibilities represent. The paper includes a review of a sampling of naming system designs that reflect different choices within the taxonomy and discussion about why those choices were made.This effort was sponsored by the Defense Advanced Research Projects Agency (DARPA) and Air Force Research Laboratory, Air Force Materiel Command, USAF, under agreement number F30602-00-2-0553

Semantic-free referencing in linked systems

Thesis (S.M.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2004.Includes bibliographical references (p. 43-45).The Web relies on the Domain Name System (DNS) to resolve the hostname portion of URLs into IP addresses. This marriage-of-convenience enabled the Web's meteoric rise, but the resulting entanglement is now hindering both infrastructures--the Web is overly constrained by the limitations of DNS, and DNS is unduly burdened by the demands of the Web. There has been much commentary on this sad state-of-affairs, but dissolving the ill-fated union between DNS and the Web requires a new way to resolve Web references. To this end, this thesis describes the design and implementation of Semantic Free Referencing (SFR), a reference resolution infrastructure based on distributed hash tables (DHTs).by Michael Walfish.S.M

Applying the Canonical Text Services Model to the Coptic SCRIPTORIUM

Coptic SCRIPTORIUM is a platform for interdisciplinary and computational research in Coptic texts and linguistics. The purpose of this project was to research and implement a system of stable identification for the texts and linguistic data objects in Coptic SCRIPTORIUM to facilitate their citation and reuse. We began the project with a preferred solution, the Canonical Text Services URN model, which we validated for suitability for the corpus and compared it to other approaches, including HTTP URLs and Handles. The process of applying the CTS model to Coptic SCRIPTORIUM required an in-depth analysis that took into account the domain-specific scholarly research and citation practices, the structure of the textual data, and the data management workflow

MIRIAM Resources: next steps

This presentation gives a short introduction of MIRIAM Resources ("http://www.ebi.ac.uk/miriam/":http://www.ebi.ac.uk/miriam/), a robust annotation and cross referencing framework, based on URNs.

The presentation also explains some potential issues with the current system and presents a possible solution.

Finally, the presentation introduces some forthcoming and suggested updates and extensions to the current infrastructure