22,141 research outputs found
Evaluation of two interaction techniques for visualization of dynamic graphs
Several techniques for visualization of dynamic graphs are based on different
spatial arrangements of a temporal sequence of node-link diagrams. Many studies
in the literature have investigated the importance of maintaining the user's
mental map across this temporal sequence, but usually each layout is considered
as a static graph drawing and the effect of user interaction is disregarded. We
conducted a task-based controlled experiment to assess the effectiveness of two
basic interaction techniques: the adjustment of the layout stability and the
highlighting of adjacent nodes and edges. We found that generally both
interaction techniques increase accuracy, sometimes at the cost of longer
completion times, and that the highlighting outclasses the stability adjustment
for many tasks except the most complex ones.Comment: Appears in the Proceedings of the 24th International Symposium on
Graph Drawing and Network Visualization (GD 2016
Dynamic Influence Networks for Rule-based Models
We introduce the Dynamic Influence Network (DIN), a novel visual analytics
technique for representing and analyzing rule-based models of protein-protein
interaction networks. Rule-based modeling has proved instrumental in developing
biological models that are concise, comprehensible, easily extensible, and that
mitigate the combinatorial complexity of multi-state and multi-component
biological molecules. Our technique visualizes the dynamics of these rules as
they evolve over time. Using the data produced by KaSim, an open source
stochastic simulator of rule-based models written in the Kappa language, DINs
provide a node-link diagram that represents the influence that each rule has on
the other rules. That is, rather than representing individual biological
components or types, we instead represent the rules about them (as nodes) and
the current influence of these rules (as links). Using our interactive DIN-Viz
software tool, researchers are able to query this dynamic network to find
meaningful patterns about biological processes, and to identify salient aspects
of complex rule-based models. To evaluate the effectiveness of our approach, we
investigate a simulation of a circadian clock model that illustrates the
oscillatory behavior of the KaiC protein phosphorylation cycle.Comment: Accepted to TVCG, in pres
Graph Summarization
The continuous and rapid growth of highly interconnected datasets, which are
both voluminous and complex, calls for the development of adequate processing
and analytical techniques. One method for condensing and simplifying such
datasets is graph summarization. It denotes a series of application-specific
algorithms designed to transform graphs into more compact representations while
preserving structural patterns, query answers, or specific property
distributions. As this problem is common to several areas studying graph
topologies, different approaches, such as clustering, compression, sampling, or
influence detection, have been proposed, primarily based on statistical and
optimization methods. The focus of our chapter is to pinpoint the main graph
summarization methods, but especially to focus on the most recent approaches
and novel research trends on this topic, not yet covered by previous surveys.Comment: To appear in the Encyclopedia of Big Data Technologie
Big Data Visualization Tools
Data visualization is the presentation of data in a pictorial or graphical
format, and a data visualization tool is the software that generates this
presentation. Data visualization provides users with intuitive means to
interactively explore and analyze data, enabling them to effectively identify
interesting patterns, infer correlations and causalities, and supports
sense-making activities.Comment: This article appears in Encyclopedia of Big Data Technologies,
Springer, 201
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