Spatial information retrieval and geographical ontologies: an overview of the SPIRIT project

A large proportion of the resources available on the world-wide web refer to information that may be regarded as geographically located. Thus most activities and enterprises take place in one or more places on the Earth's surface and there is a wealth of survey data, images, maps and reports that relate to specific places or regions. Despite the prevalence of geographical context, existing web search facilities are poorly adapted to help people find information that relates to a particular location. When the name of a place is typed into a typical search engine, web pages that include that name in their text will be retrieved, but it is likely that many resources that are also associated with the place may not be retrieved. Thus resources relating to places that are inside the specified place may not be found, nor may be places that are nearby or that are equivalent but referred to by another name. Specification of geographical context frequently requires the use of spatial relationships concerning distance or containment for example, yet such terminology cannot be understood by existing search engines. Here we provide a brief survey of existing facilities for geographical information retrieval on the web, before describing a set of tools and techniques that are being developed in the project SPIRIT : Spatially-Aware Information Retrieval on the Internet (funded by European Commission Framework V Project IST-2001-35047)

OBOME - Ontology based opinion mining in UBIPOL

Ontologies have a special role in the UBIPOL system, they help to structure the policy related context, provide conceptualization for policy domain and use in the opinion mining process. In this work we presented a system called Ontology Based Opinion Mining Engine (OBOME) for analyzing a domain-specific opinion corpus by first assisting the user with the creation of a domain ontology from the corpus. We determined the polarity of opinion on the various domain aspects. In the former step, the policy domain aspect has are identified (namely which policy category is represented by the concept). This identification is supported by the policy modelling ontology, which describe the most important policy – related classes and structure. Then the most informative documents from the corpus are extracted and asked the user to create a set of aspects and related keywords using these documents. In the latter step, we used the corpus specific ontology to model the domain and extracted aspect-polarity associations using grammatical dependencies between words. Later, summarized results are shown to the user to analyze and store. Finally, in an offline process policy modeling ontology is updated

A Linear Classifier Based on Entity Recognition Tools and a Statistical Approach to Method Extraction in the Protein-Protein Interaction Literature

We participated, in the Article Classification and the Interaction Method subtasks (ACT and IMT, respectively) of the Protein-Protein Interaction task of the BioCreative III Challenge. For the ACT, we pursued an extensive testing of available Named Entity Recognition and dictionary tools, and used the most promising ones to extend our Variable Trigonometric Threshold linear classifier. For the IMT, we experimented with a primarily statistical approach, as opposed to employing a deeper natural language processing strategy. Finally, we also studied the benefits of integrating the method extraction approach that we have used for the IMT into the ACT pipeline. For the ACT, our linear article classifier leads to a ranking and classification performance significantly higher than all the reported submissions. For the IMT, our results are comparable to those of other systems, which took very different approaches. For the ACT, we show that the use of named entity recognition tools leads to a substantial improvement in the ranking and classification of articles relevant to protein-protein interaction. Thus, we show that our substantially expanded linear classifier is a very competitive classifier in this domain. Moreover, this classifier produces interpretable surfaces that can be understood as "rules" for human understanding of the classification. In terms of the IMT task, in contrast to other participants, our approach focused on identifying sentences that are likely to bear evidence for the application of a PPI detection method, rather than on classifying a document as relevant to a method. As BioCreative III did not perform an evaluation of the evidence provided by the system, we have conducted a separate assessment; the evaluators agree that our tool is indeed effective in detecting relevant evidence for PPI detection methods.Comment: BMC Bioinformatics. In Pres

Textpresso for Neuroscience: Searching the Full Text of Thousands of Neuroscience Research Papers

Textpresso is a text-mining system for scientific literature. Its two major features are access to the full text of research papers and the development and use of categories of biological concepts as well as categories that describe or relate objects. A search engine enables the user to search for one or a combination of these categories and/or keywords within an entire literature. Here we describe Textpresso for Neuroscience, part of the core Neuroscience Information Framework (NIF). The Textpresso site currently consists of 67,500 full text papers and 131,300 abstracts. We show that using categories in literature can make a pure keyword query more refined and meaningful. We also show how semantic queries can be formulated with categories only. We explain the build and content of the database and describe the main features of the web pages and the advanced search options. We also give detailed illustrations of the web service developed to provide programmatic access to Textpresso. This web service is used by the NIF interface to access Textpresso. The standalone website of Textpresso for Neuroscience can be accessed at http://www.textpresso.org/neuroscience

The Development and the Evaluation of a System for Extracting Events from Web Pages

The centralization of a particular event is primarily useful for running news services. These services should provide updated information, if possible even in real time, on a specific type of event. These events and their extraction involved the automatic analysis of linguistic structure documents to determine the possible sequences in which these events occur in documents. This analysis will provide structured and semi-structured documents in which the unit events can be extracted automatically. In order to measure the quality of a system, a methodology will be introduced, which describes the stages and how the decomposition of a system for extracting events in components, quality attributes and properties will be defined for these components, and finally will be introduced metrics for evaluation.Event, Performance Metric, Event Extraction System

Automatic tagging and geotagging in video collections and communities

Automatically generated tags and geotags hold great promise to improve access to video collections and online communi- ties. We overview three tasks offered in the MediaEval 2010 benchmarking initiative, for each, describing its use scenario, definition and the data set released. For each task, a reference algorithm is presented that was used within MediaEval 2010 and comments are included on lessons learned. The Tagging Task, Professional involves automatically matching episodes in a collection of Dutch television with subject labels drawn from the keyword thesaurus used by the archive staff. The Tagging Task, Wild Wild Web involves automatically predicting the tags that are assigned by users to their online videos. Finally, the Placing Task requires automatically assigning geo-coordinates to videos. The specification of each task admits the use of the full range of available information including user-generated metadata, speech recognition transcripts, audio, and visual features

The REVERE project:Experiments with the application of probabilistic NLP to systems engineering

Despite natural language’s well-documented shortcomings as a medium for precise technical description, its use in software-intensive systems engineering remains inescapable. This poses many problems for engineers who must derive problem understanding and synthesise precise solution descriptions from free text. This is true both for the largely unstructured textual descriptions from which system requirements are derived, and for more formal documents, such as standards, which impose requirements on system development processes. This paper describes experiments that we have carried out in the REVERE1 project to investigate the use of probabilistic natural language processing techniques to provide systems engineering support

Automatic Discovery and Ranking of Synonyms for Search Keywords in the Web

Search engines are an indispensable part of a web user's life. A vast majority of these web users experience difficulties caused by the keyword-based search engines such as inaccurate results for queries and irrelevant URLs even though the given keyword is present in them. Also, relevant URLs may be lost as they may have the synonym of the keyword and not the original one. This condition is known as the polysemy problem. To alleviate these problems, we propose an algorithm called automatic discovery and ranking of synonyms for search keywords in the web (ADRS). The proposed method generates a list of candidate synonyms for individual keywords by employing the relevance factor of the URLs associated with the synonyms. Then, ranking of these candidate synonyms is done using co-occurrence frequencies and various page count-based measures. One of the major advantages of our algorithm is that it is highly scalable which makes it applicable to online data on the dynamic, domain-independent and unstructured World Wide Web. The experimental results show that the best results are obtained using the proposed algorithm with WebJaccard

Queensland University of Technology at TREC 2005

The Information Retrieval and Web Intelligence (IR-WI) research group is a research team at the Faculty of Information Technology, QUT, Brisbane, Australia. The IR-WI group participated in the Terabyte and Robust track at TREC 2005, both for the first time. For the Robust track we applied our existing information retrieval system that was originally designed for use with structured (XML) retrieval to the domain of document retrieval. For the Terabyte track we experimented with an open source IR system, Zettair and performed two types of experiments. First, we compared Zettair’s performance on both a high-powered supercomputer and a distributed system across seven midrange personal computers. Second, we compared Zettair’s performance when a standard TREC title is used, compared with a natural language query, and a query expanded with synonyms. We compare the systems both in terms of efficiency and retrieval performance. Our results indicate that the distributed system is faster than the supercomputer, while slightly decreasing retrieval performance, and that natural language queries also slightly decrease retrieval performance, while our query expansion technique significantly decreased performance