Performance Evaluation of Hadoop based Big Data Applications with HiBench Benchmarking tool on IaaS Cloud Platforms

Cloud computing is a computing paradigm where large numbers of devices are connected through networks that provide a dynamically scalable infrastructure for applications, data and storage. Currently, many businesses, from small scale to big companies and industries, are changing their operations to utilize cloud services because cloud platforms could increase company’s growth through process efficiency and reduction in information technology spending [Coles16]. Companies are relying on cloud platforms like Amazon Web Services, Google Compute Engine, and Microsoft Azure, etc., for their business development. Due to the emergence of new technologies, devices, and communications, the amount of data produced is growing rapidly every day. Big data is a collection of large dataset, typically hundreds of gigabytes, terabytes or petabytes. Big data storage and the analytics of this huge volume of data are a great challenge for companies and new businesses to handle, which is a primary focus of this paper. This research was conducted on Amazon’s Elastic Compute Cloud (EC2) and Microsoft Azure platforms using the HiBench Hadoop Big Data Benchmark suite [HiBench16]. Processing huge volumes of data is a tedious task that is normally handled through traditional database servers. In contrast, Hadoop is a powerful framework is used to handle applications with big data requirements efficiently by using the MapReduce algorithm to run them on systems with many commodity hardware nodes. Hadoop’s distributed file system facilitates rapid storage and data transfer rates of big data among the nodes and remains operational even when a node failure has occurred in a cluster. HiBench is a big data benchmarking tool that is used for evaluating the performance of big data applications whose data are handled and controlled by the Hadoop framework cluster. Hadoop cluster environment was enabled and evaluated on two cloud platforms. A quantitative comparison was performed on Amazon EC2 and Microsoft Azure along with a study of their pricing models. Measures are suggested for future studies and research

Hadoop Performance Analysis Model with Deep Data Locality

Background: Hadoop has become the base framework on the big data system via the simple concept that moving computation is cheaper than moving data. Hadoop increases a data locality in the Hadoop Distributed File System (HDFS) to improve the performance of the system. The network traffic among nodes in the big data system is reduced by increasing a data-local on the machine. Traditional research increased the data-local on one of the MapReduce stages to increase the Hadoop performance. However, there is currently no mathematical performance model for the data locality on the Hadoop. Methods: This study made the Hadoop performance analysis model with data locality for analyzing the entire process of MapReduce. In this paper, the data locality concept on the map stage and shuffle stage was explained. Also, this research showed how to apply the Hadoop performance analysis model to increase the performance of the Hadoop system by making the deep data locality. Results: This research proved the deep data locality for increasing performance of Hadoop via three tests, such as, a simulation base test, a cloud test and a physical test. According to the test, the authors improved the Hadoop system by over 34% by using the deep data locality. Conclusions: The deep data locality improved the Hadoop performance by reducing the data movement in HDFS

Big-Data Science in Porous Materials: Materials Genomics and Machine Learning

By combining metal nodes with organic linkers we can potentially synthesize millions of possible metal organic frameworks (MOFs). At present, we have libraries of over ten thousand synthesized materials and millions of in-silico predicted materials. The fact that we have so many materials opens many exciting avenues to tailor make a material that is optimal for a given application. However, from an experimental and computational point of view we simply have too many materials to screen using brute-force techniques. In this review, we show that having so many materials allows us to use big-data methods as a powerful technique to study these materials and to discover complex correlations. The first part of the review gives an introduction to the principles of big-data science. We emphasize the importance of data collection, methods to augment small data sets, how to select appropriate training sets. An important part of this review are the different approaches that are used to represent these materials in feature space. The review also includes a general overview of the different ML techniques, but as most applications in porous materials use supervised ML our review is focused on the different approaches for supervised ML. In particular, we review the different method to optimize the ML process and how to quantify the performance of the different methods. In the second part, we review how the different approaches of ML have been applied to porous materials. In particular, we discuss applications in the field of gas storage and separation, the stability of these materials, their electronic properties, and their synthesis. The range of topics illustrates the large variety of topics that can be studied with big-data science. Given the increasing interest of the scientific community in ML, we expect this list to rapidly expand in the coming years.Comment: Editorial changes (typos fixed, minor adjustments to figures

Controlling Network Latency in Mixed Hadoop Clusters: Do We Need Active Queue Management?

With the advent of big data, data center applications are processing vast amounts of unstructured and semi-structured data, in parallel on large clusters, across hundreds to thousands of nodes. The highest performance for these batch big data workloads is achieved using expensive network equipment with large buffers, which accommodate bursts in network traffic and allocate bandwidth fairly even when the network is congested. Throughput-sensitive big data applications are, however, often executed in the same data center as latency-sensitive workloads. For both workloads to be supported well, the network must provide both maximum throughput and low latency. Progress has been made in this direction, as modern network switches support Active Queue Management (AQM) and Explicit Congestion Notifications (ECN), both mechanisms to control the level of queue occupancy, reducing the total network latency. This paper is the first study of the effect of Active Queue Management on both throughput and latency, in the context of Hadoop and the MapReduce programming model. We give a quantitative comparison of four different approaches for controlling buffer occupancy and latency: RED and CoDel, both standalone and also combined with ECN and DCTCP network protocol, and identify the AQM configurations that maintain Hadoop execution time gains from larger buffers within 5%, while reducing network packet latency caused by bufferbloat by up to 85%. Finally, we provide recommendations to administrators of Hadoop clusters as to how to improve latency without degrading the throughput of batch big data workloads.The research leading to these results has received funding from the European Unions Seventh Framework Programme (FP7/2007–2013) under grant agreement number 610456 (Euroserver). The research was also supported by the Ministry of Economy and Competitiveness of Spain under the contracts TIN2012-34557 and TIN2015-65316-P, Generalitat de Catalunya (contracts 2014-SGR-1051 and 2014-SGR-1272), HiPEAC-3 Network of Excellence (ICT- 287759), and the Severo Ochoa Program (SEV-2011-00067) of the Spanish Government.Peer ReviewedPostprint (author's final draft

Finding Top-k Dominance on Incomplete Big Data Using Map-Reduce Framework

Incomplete data is one major kind of multi-dimensional dataset that has random-distributed missing nodes in its dimensions. It is very difficult to retrieve information from this type of dataset when it becomes huge. Finding top-k dominant values in this type of dataset is a challenging procedure. Some algorithms are present to enhance this process but are mostly efficient only when dealing with a small-size incomplete data. One of the algorithms that make the application of TKD query possible is the Bitmap Index Guided (BIG) algorithm. This algorithm strongly improves the performance for incomplete data, but it is not originally capable of finding top-k dominant values in incomplete big data, nor is it designed to do so. Several other algorithms have been proposed to find the TKD query, such as Skyband Based and Upper Bound Based algorithms, but their performance is also questionable. Algorithms developed previously were among the first attempts to apply TKD query on incomplete data; however, all these had weak performances or were not compatible with the incomplete data. This thesis proposes MapReduced Enhanced Bitmap Index Guided Algorithm (MRBIG) for dealing with the aforementioned issues. MRBIG uses the MapReduce framework to enhance the performance of applying top-k dominance queries on huge incomplete datasets. The proposed approach uses the MapReduce parallel computing approach using multiple computing nodes. The framework separates the tasks between several computing nodes that independently and simultaneously work to find the result. This method has achieved up to two times faster processing time in finding the TKD query result in comparison to previously presented algorithms

Scientific Computing Meets Big Data Technology: An Astronomy Use Case

Scientific analyses commonly compose multiple single-process programs into a dataflow. An end-to-end dataflow of single-process programs is known as a many-task application. Typically, tools from the HPC software stack are used to parallelize these analyses. In this work, we investigate an alternate approach that uses Apache Spark -- a modern big data platform -- to parallelize many-task applications. We present Kira, a flexible and distributed astronomy image processing toolkit using Apache Spark. We then use the Kira toolkit to implement a Source Extractor application for astronomy images, called Kira SE. With Kira SE as the use case, we study the programming flexibility, dataflow richness, scheduling capacity and performance of Apache Spark running on the EC2 cloud. By exploiting data locality, Kira SE achieves a 2.5x speedup over an equivalent C program when analyzing a 1TB dataset using 512 cores on the Amazon EC2 cloud. Furthermore, we show that by leveraging software originally designed for big data infrastructure, Kira SE achieves competitive performance to the C implementation running on the NERSC Edison supercomputer. Our experience with Kira indicates that emerging Big Data platforms such as Apache Spark are a performant alternative for many-task scientific applications