37 research outputs found
ShearLab 3D: Faithful Digital Shearlet Transforms based on Compactly Supported Shearlets
Wavelets and their associated transforms are highly efficient when
approximating and analyzing one-dimensional signals. However, multivariate
signals such as images or videos typically exhibit curvilinear singularities,
which wavelets are provably deficient of sparsely approximating and also of
analyzing in the sense of, for instance, detecting their direction. Shearlets
are a directional representation system extending the wavelet framework, which
overcomes those deficiencies. Similar to wavelets, shearlets allow a faithful
implementation and fast associated transforms. In this paper, we will introduce
a comprehensive carefully documented software package coined ShearLab 3D
(www.ShearLab.org) and discuss its algorithmic details. This package provides
MATLAB code for a novel faithful algorithmic realization of the 2D and 3D
shearlet transform (and their inverses) associated with compactly supported
universal shearlet systems incorporating the option of using CUDA. We will
present extensive numerical experiments in 2D and 3D concerning denoising,
inpainting, and feature extraction, comparing the performance of ShearLab 3D
with similar transform-based algorithms such as curvelets, contourlets, or
surfacelets. In the spirit of reproducible reseaerch, all scripts are
accessible on www.ShearLab.org.Comment: There is another shearlet software package
(http://www.mathematik.uni-kl.de/imagepro/members/haeuser/ffst/) by S.
H\"auser and G. Steidl. We will include this in a revisio
Multispectral Palmprint Encoding and Recognition
Palmprints are emerging as a new entity in multi-modal biometrics for human
identification and verification. Multispectral palmprint images captured in the
visible and infrared spectrum not only contain the wrinkles and ridge structure
of a palm, but also the underlying pattern of veins; making them a highly
discriminating biometric identifier. In this paper, we propose a feature
encoding scheme for robust and highly accurate representation and matching of
multispectral palmprints. To facilitate compact storage of the feature, we
design a binary hash table structure that allows for efficient matching in
large databases. Comprehensive experiments for both identification and
verification scenarios are performed on two public datasets -- one captured
with a contact-based sensor (PolyU dataset), and the other with a contact-free
sensor (CASIA dataset). Recognition results in various experimental setups show
that the proposed method consistently outperforms existing state-of-the-art
methods. Error rates achieved by our method (0.003% on PolyU and 0.2% on CASIA)
are the lowest reported in literature on both dataset and clearly indicate the
viability of palmprint as a reliable and promising biometric. All source codes
are publicly available.Comment: Preliminary version of this manuscript was published in ICCV 2011. Z.
Khan A. Mian and Y. Hu, "Contour Code: Robust and Efficient Multispectral
Palmprint Encoding for Human Recognition", International Conference on
Computer Vision, 2011. MATLAB Code available:
https://sites.google.com/site/zohaibnet/Home/code
A Tutorial on Speckle Reduction in Synthetic Aperture Radar Images
Speckle is a granular disturbance, usually modeled as a multiplicative noise, that affects synthetic aperture radar (SAR) images, as well as all coherent images. Over the last three decades, several methods have been proposed for the reduction of speckle, or despeckling, in SAR images. Goal of this paper is making a comprehensive review of despeckling methods since their birth, over thirty years ago, highlighting trends and changing approaches over years. The concept of fully developed speckle is explained. Drawbacks of homomorphic filtering are pointed out. Assets of multiresolution despeckling, as opposite to spatial-domain despeckling, are highlighted. Also advantages of undecimated, or stationary, wavelet transforms over decimated ones are discussed. Bayesian estimators and probability density function (pdf) models in both spatial and multiresolution domains are reviewed. Scale-space varying pdf models, as opposite to scale varying models, are promoted. Promising methods following non-Bayesian approaches, like nonlocal (NL) filtering and total variation (TV) regularization, are reviewed and compared to spatial- and wavelet-domain Bayesian filters. Both established and new trends for assessment of despeckling are presented. A few experiments on simulated data and real COSMO-SkyMed SAR images highlight, on one side the costperformance tradeoff of the different methods, on the other side the effectiveness of solutions purposely designed for SAR heterogeneity and not fully developed speckle. Eventually, upcoming methods based on new concepts of signal processing, like compressive sensing, are foreseen as a new generation of despeckling, after spatial-domain and multiresolution-domain method
Enhancement of Single and Composite Images Based on Contourlet Transform Approach
Image enhancement is an imperative step in almost every image processing algorithms.
Numerous image enhancement algorithms have been developed for gray scale images
despite their absence in many applications lately. This thesis proposes hew image
enhancement techniques of 8-bit single and composite digital color images. Recently, it
has become evident that wavelet transforms are not necessarily best suited for images.
Therefore, the enhancement approaches are based on a new 'true' two-dimensional
transform called contourlet transform. The proposed enhancement techniques discussed
in this thesis are developed based on the understanding of the working mechanisms of the
new multiresolution property of contourlet transform. This research also investigates the
effects of using different color space representations for color image enhancement
applications. Based on this investigation an optimal color space is selected for both single
image and composite image enhancement approaches. The objective evaluation steps
show that the new method of enhancement not only superior to the commonly used
transformation method (e.g. wavelet transform) but also to various spatial models (e.g.
histogram equalizations). The results found are encouraging and the enhancement
algorithms have proved to be more robust and reliable
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Deep learning assisted MRI guided attenuation correction in PET
This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University LondonPositron emission tomography (PET) is a unique imaging modality that provides physiological
and functional details of the tissue at the molecular level. However, the acquired PET images
have some limitations such as the attenuation. PET attenuation correction is an essential step to
obtain the full potential of PET quantification. With the wide use of hybrid PET/MR scanners,
magnetic resonance (MR) images are used to address the problem of PET attenuation correction.
The MR images segmentation is one simple and robust approach to create pseudo computed
tomography (CT) images, which are used to generate attenuation coefficient maps to correct the
PET attenuation. Recently, deep learning has been proposed and used as a promising technique
to efficiently perform MR and various medical images segmentation.
In this research work, deep learning guided segmentation approaches have been proposed
to enhance the bone class segmentation of MR brain images in order to generate accurate
pseudo-CT images. The first approach has introduced the combination of handcrafted features
with deep learning features to enrich the set of features. Multiresolution analysis techniques,
which generate multiscale and multidirectional coefficients of an image such as contourlet and
shearlet transforms, are applied and combined with deep convolutional neural network (CNN)
features. Different experiments have been conducted to investigate the number of selected
coefficients and the insertion location of the handcrafted features.
The second approach aims at reducing the segmentation algorithm’s complexity while
maintaining the segmentation performance. An attention based convolutional encode-decoder
network has been proposed to adaptively recalibrate the deep network features. This attention based
network consists of two different squeeze and excitation blocks that excite the features
spatially and channel wise. The two blocks are combined sequentially to decrease the number
of network’s parameters and reduces the model complexity. The third approach has been focuses on the application of transfer learning from different MR sequences such as T1 weighted (T1-w) and T2 weighted (T2-w) images. A
pretrained model with T1-w MR sequences is fine tuned to perform the segmentation of T2-w
images. Multiple fine tuning approaches and experiments have been conducted to study the best
fine tuning mechanism that is able to build an efficient segmentation model for both T1-w and
T2-w segmentation. Clinical datasets of fifty patients with different conditions and diagnosis have been
used to carry an objective evaluation to measure the segmentation performance of the results
obtained by the three proposed methods. The first and second approaches have been validated
with other studies in the literature that applied deep network based segmentation technique to
perform MR based attenuation correction for PET images. The proposed methods have shown
an enhancement in the bone segmentation with an increase of dice similarity coefficient (DSC)
from 0.6179 to 0.6567 using an ensemble of CNNs with an improvement percentage of 6.3%.
The proposed excitation-based CNN has decreased the model complexity by decreasing the
number of trainable parameters by more than 46% where less computing resources are required
to train the model. The proposed hybrid transfer learning method has shown its superiority to
build a multi-sequences (T1-w and T2-w) segmentation approach compared to other applied
transfer learning methods especially with the bone class where the DSC is increased from 0.3841
to 0.5393. Moreover, the hybrid transfer learning approach requires less computing time than
transfer learning using open and conservative fine tuning