70,756 research outputs found
Closing the loop: assisting archival appraisal and information retrieval in one sweep
In this article, we examine the similarities between the concept of appraisal, a process that takes place within the archives, and the concept of relevance judgement, a process fundamental to the evaluation of information retrieval systems. More specifically, we revisit selection criteria proposed as result of archival research, and work within the digital curation communities, and, compare them to relevance criteria as discussed within information retrieval's literature based discovery. We illustrate how closely these criteria relate to each other and discuss how understanding the relationships between the these disciplines could form a basis for proposing automated selection for archival processes and initiating multi-objective learning with respect to information retrieval
Using Machine Learning and Natural Language Processing to Review and Classify the Medical Literature on Cancer Susceptibility Genes
PURPOSE: The medical literature relevant to germline genetics is growing
exponentially. Clinicians need tools monitoring and prioritizing the literature
to understand the clinical implications of the pathogenic genetic variants. We
developed and evaluated two machine learning models to classify abstracts as
relevant to the penetrance (risk of cancer for germline mutation carriers) or
prevalence of germline genetic mutations. METHODS: We conducted literature
searches in PubMed and retrieved paper titles and abstracts to create an
annotated dataset for training and evaluating the two machine learning
classification models. Our first model is a support vector machine (SVM) which
learns a linear decision rule based on the bag-of-ngrams representation of each
title and abstract. Our second model is a convolutional neural network (CNN)
which learns a complex nonlinear decision rule based on the raw title and
abstract. We evaluated the performance of the two models on the classification
of papers as relevant to penetrance or prevalence. RESULTS: For penetrance
classification, we annotated 3740 paper titles and abstracts and used 60% for
training the model, 20% for tuning the model, and 20% for evaluating the model.
The SVM model achieves 89.53% accuracy (percentage of papers that were
correctly classified) while the CNN model achieves 88.95 % accuracy. For
prevalence classification, we annotated 3753 paper titles and abstracts. The
SVM model achieves 89.14% accuracy while the CNN model achieves 89.13 %
accuracy. CONCLUSION: Our models achieve high accuracy in classifying abstracts
as relevant to penetrance or prevalence. By facilitating literature review,
this tool could help clinicians and researchers keep abreast of the burgeoning
knowledge of gene-cancer associations and keep the knowledge bases for clinical
decision support tools up to date
Methods for Classifying Nonprofit Organizations According to their Field of Activity: A Report on Semi-automated Methods Based on Text
There are various methods for classifying nonprofit organizations (NPOs) according to their field of activity. We report our experiences using two semi-automated methods based on textual data: rule-based classification and machine learning with curated keywords. We use those methods to classify Austrian nonprofit organizations based on the International Classification of Nonprofit Organizations. Those methods can provide a solution to the widespread research problem that quantitative data on the activities of NPOs are needed but not readily available from administrative data, long high-quality texts describing NPOs' activities are mostly unavailable, and human labor resources are limited. We find that in such a setting, rule-based classification performs about as well as manual human coding in terms of precision and sensitivity, while being much more labor-saving. Hence, we share our insights on how to efficiently implement such a rule-based approach. To address scholars with a background in data analytics as well as those without, we provide non-technical explanations and open-source sample code that is free to use and adapt
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