Speeding-up Dynamic Programming with Representative Sets - An Experimental Evaluation of Algorithms for Steiner Tree on Tree Decompositions

Dynamic programming on tree decompositions is a frequently used approach to solve otherwise intractable problems on instances of small treewidth. In recent work by Bodlaender et al., it was shown that for many connectivity problems, there exist algorithms that use time, linear in the number of vertices, and single exponential in the width of the tree decomposition that is used. The central idea is that it suffices to compute representative sets, and these can be computed efficiently with help of Gaussian elimination. In this paper, we give an experimental evaluation of this technique for the Steiner Tree problem. A comparison of the classic dynamic programming algorithm and the improved dynamic programming algorithm that employs the table reduction shows that the new approach gives significant improvements on the running time of the algorithm and the size of the tables computed by the dynamic programming algorithm, and thus that the rank based approach from Bodlaender et al. does not only give significant theoretical improvements but also is a viable approach in a practical setting, and showcases the potential of exploiting the idea of representative sets for speeding up dynamic programming algorithms

Solving weighted and counting variants of connectivity problems parameterized by treewidth deterministically in single exponential time

It is well known that many local graph problems, like Vertex Cover and Dominating Set, can be solved in 2^{O(tw)}|V|^{O(1)} time for graphs G=(V,E) with a given tree decomposition of width tw. However, for nonlocal problems, like the fundamental class of connectivity problems, for a long time we did not know how to do this faster than tw^{O(tw)}|V|^{O(1)}. Recently, Cygan et al. (FOCS 2011) presented Monte Carlo algorithms for a wide range of connectivity problems running in time $c^{tw}|V|^{O(1)} for a small constant c, e.g., for Hamiltonian Cycle and Steiner tree. Naturally, this raises the question whether randomization is necessary to achieve this runtime; furthermore, it is desirable to also solve counting and weighted versions (the latter without incurring a pseudo-polynomial cost in terms of the weights). We present two new approaches rooted in linear algebra, based on matrix rank and determinants, which provide deterministic c^{tw}|V|^{O(1)} time algorithms, also for weighted and counting versions. For example, in this time we can solve the traveling salesman problem or count the number of Hamiltonian cycles. The rank-based ideas provide a rather general approach for speeding up even straightforward dynamic programming formulations by identifying "small" sets of representative partial solutions; we focus on the case of expressing connectivity via sets of partitions, but the essential ideas should have further applications. The determinant-based approach uses the matrix tree theorem for deriving closed formulas for counting versions of connectivity problems; we show how to evaluate those formulas via dynamic programming.Comment: 36 page

An Efficient Algorithm for Computing Network Reliability in Small Treewidth

We consider the classic problem of Network Reliability. A network is given together with a source vertex, one or more target vertices, and probabilities assigned to each of the edges. Each edge appears in the network with its associated probability and the problem is to determine the probability of having at least one source-to-target path. This problem is known to be NP-hard. We present a linear-time fixed-parameter algorithm based on a parameter called treewidth, which is a measure of tree-likeness of graphs. Network Reliability was already known to be solvable in polynomial time for bounded treewidth, but there were no concrete algorithms and the known methods used complicated structures and were not easy to implement. We provide a significantly simpler and more intuitive algorithm that is much easier to implement. We also report on an implementation of our algorithm and establish the applicability of our approach by providing experimental results on the graphs of subway and transit systems of several major cities, such as London and Tokyo. To the best of our knowledge, this is the first exact algorithm for Network Reliability that can scale to handle real-world instances of the problem.Comment: 14 page

A Solution Merging Heuristic for the Steiner Problem in Graphs Using Tree Decompositions

Fixed parameter tractable algorithms for bounded treewidth are known to exist for a wide class of graph optimization problems. While most research in this area has been focused on exact algorithms, it is hard to find decompositions of treewidth sufficiently small to make these al- gorithms fast enough for practical use. Consequently, tree decomposition based algorithms have limited applicability to large scale optimization. However, by first reducing the input graph so that a small width tree decomposition can be found, we can harness the power of tree decomposi- tion based techniques in a heuristic algorithm, usable on graphs of much larger treewidth than would be tractable to solve exactly. We propose a solution merging heuristic to the Steiner Tree Problem that applies this idea. Standard local search heuristics provide a natural way to generate subgraphs with lower treewidth than the original instance, and subse- quently we extract an improved solution by solving the instance induced by this subgraph. As such the fixed parameter tractable algorithm be- comes an efficient tool for our solution merging heuristic. For a large class of sparse benchmark instances the algorithm is able to find small width tree decompositions on the union of generated solutions. Subsequently it can often improve on the generated solutions fast

Tractable Optimization Problems through Hypergraph-Based Structural Restrictions

Several variants of the Constraint Satisfaction Problem have been proposed and investigated in the literature for modelling those scenarios where solutions are associated with some given costs. Within these frameworks computing an optimal solution is an NP-hard problem in general; yet, when restricted over classes of instances whose constraint interactions can be modelled via (nearly-)acyclic graphs, this problem is known to be solvable in polynomial time. In this paper, larger classes of tractable instances are singled out, by discussing solution approaches based on exploiting hypergraph acyclicity and, more generally, structural decomposition methods, such as (hyper)tree decompositions

Fixed-parameter tractable canonization and isomorphism test for graphs of bounded treewidth

We give a fixed-parameter tractable algorithm that, given a parameter $k$ and two graphs $G_1,G_2$, either concludes that one of these graphs has treewidth at least $k$, or determines whether $G_1$ and $G_2$ are isomorphic. The running time of the algorithm on an $n$-vertex graph is $2^{O(k^5\log k)}\cdot n^5$, and this is the first fixed-parameter algorithm for Graph Isomorphism parameterized by treewidth. Our algorithm in fact solves the more general canonization problem. We namely design a procedure working in $2^{O(k^5\log k)}\cdot n^5$ time that, for a given graph $G$ on $n$ vertices, either concludes that the treewidth of $G$ is at least $k$, or: * finds in an isomorphic-invariant way a graph $\mathfrak{c}(G)$ that is isomorphic to $G$; * finds an isomorphism-invariant construction term --- an algebraic expression that encodes $G$ together with a tree decomposition of $G$ of width $O(k^4)$. Hence, the isomorphism test reduces to verifying whether the computed isomorphic copies or the construction terms for $G_1$ and $G_2$ are equal.Comment: Full version of a paper presented at FOCS 201