Topic modeling for entity linking using keyphrase

This paper proposes an Entity Linking system that applies a topic modeling ranking. We apply a novel approach in order to provide new relevant elements to the model. These elements are keyphrases related to the queries and gathered from a huge Wikipedia-based knowledge resourcePeer ReviewedPostprint (author’s final draft

Text Preprocessing for Speech Synthesis

In this paper we describe our text preprocessing modules for English text-to-speech synthesis. These modules comprise rule-based text normalization subsuming sentence segmentation and normalization of non-standard words, statistical part-of-speech tagging, and statistical syllabification, grapheme-to-phoneme conversion, and word stress assignment relying in parts on rule-based morphological analysis

Word Sense Disambiguation for clinical abbreviations

Abbreviations are extensively used in electronic health records (EHR) of patients as well as medical documentation, reaching 30-50% of the words in clinical narrative. There are more than 197,000 unique medical abbreviations found in the clinical text and their meanings vary depending on the context in which they are used. Since data in electronic health records could be shareable across health information systems (hospitals, primary care centers, etc.) as well as others such as insurance companies information systems, it is essential determining the correct meaning of the abbreviations to avoid misunderstandings. Clinical abbreviations have specific characteristic that do not follow any standard rules for creating them. This makes it complicated to find said abbreviations and corresponding meanings. Furthermore, there is an added difficulty to working with clinical data due to privacy reasons, since it is essential to have them in order to develop and test algorithms. Word sense disambiguation (WSD) is an essential task in natural language processing (NLP) applications such as information extraction, chatbots and summarization systems among others. WSD aims to identify the correct meaning of the ambiguous word which has more than one meaning. Disambiguating clinical abbreviations is a type of lexical sample WSD task. Previous research works adopted supervised, unsupervised and Knowledge-based (KB) approaches to disambiguate clinical abbreviations. This thesis aims to propose a classification model that apart from disambiguating well known abbreviations also disambiguates rare and unseen abbreviations using the most recent deep neural network architectures for language modeling. In clinical abbreviation disambiguation several resources and disambiguation models were encountered. Different classification approaches used to disambiguate the clinical abbreviations were investigated in this thesis. Considering that computers do not directly understand texts, different data representations were implemented to capture the meaning of the words. Since it is also necessary to measure the performance of algorithms, the evaluation measurements used are discussed. As the different solutions proposed to clinical WSD we have explored static word embeddings data representation on 13 English clinical abbreviations of the UMN data set (from University of Minnesota) by testing traditional supervised machine learning algorithms separately for each abbreviation. Moreover, we have utilized a transformer-base pretrained model that was fine-tuned as a multi-classification classifier for the whole data set (75 abbreviations of the UMN data set). The aim of implementing just one multi-class classifier is to predict rare and unseen abbreviations that are most common in clinical narrative. Additionally, other experiments were conducted for a different type of abbreviations (scientific abbreviations and acronyms) by defining a hybrid approach composed of supervised and knowledge-based approaches. Most previous works tend to build a separated classifier for each clinical abbreviation, tending to leverage different data resources to overcome the data acquisition bottleneck. However, those models were restricted to disambiguate terms that have been seen in trained data. Meanwhile, based on our results, transfer learning by fine-tuning a transformer-based model could predict rare and unseen abbreviations. A remaining challenge for future work is to improve the model to automate the disambiguation of clinical abbreviations on run-time systems by implementing self-supervised learning models.Las abreviaturas se utilizan ampliamente en las historias clínicas electrónicas de los pacientes y en mucha documentación médica, llegando a ser un 30-50% de las palabras empleadas en narrativa clínica. Existen más de 197.000 abreviaturas únicas usadas en textos clínicos siendo términos altamente ambiguos El significado de las abreviaturas varía en función del contexto en el que se utilicen. Dado que los datos de las historias clínicas electrónicas pueden compartirse entre servicios, hospitales, centros de atención primaria así como otras organizaciones como por ejemplo, las compañías de seguros es fundamental determinar el significado correcto de las abreviaturas para evitar además eventos adversos relacionados con la seguridad del paciente. Nuevas abreviaturas clínicas aparecen constantemente y tienen la característica específica de que no siguen ningún estándar para su creación. Esto hace que sea muy difícil disponer de un recurso con todas las abreviaturas y todos sus significados. A todo esto hay que añadir la dificultad para trabajar con datos clínicos por cuestiones de privacidad cuando es esencial disponer de ellos para poder desarrollar algoritmos para su tratamiento. La desambiguación del sentido de las palabras (WSD, en inglés) es una tarea esencial en tareas de procesamiento del lenguaje natural (PLN) como extracción de información, chatbots o generadores de resúmenes, entre otros. WSD tiene como objetivo identificar el significado correcto de una palabra ambigua (que tiene más de un significado). Esta tarea se ha abordado previamente utilizando tanto enfoques supervisados, no supervisados así como basados en conocimiento. Esta tesis tiene como objetivo definir un modelo de clasificación que además de desambiguar abreviaturas conocidas desambigüe también abreviaturas menos frecuentes que no han aparecido previamente en los conjuntos de entrenaminto utilizando las arquitecturas de redes neuronales profundas más recientes relacionadas ocn los modelos del lenguaje. En la desambiguación de abreviaturas clínicas se emplean diversos recursos y modelos de desambiguación. Se han investigado los diferentes enfoques de clasificación utilizados para desambiguar las abreviaturas clínicas. Dado que un ordenador no comprende directamente los textos, se han implementado diferentes representaciones de textos para capturar el significado de las palabras. Puesto que también es necesario medir el desempeño de cualquier algoritmo, se describen también las medidas de evaluación utilizadas. La mayoría de los trabajos previos se han basado en la construcción de un clasificador separado para cada abreviatura clínica. De este modo, tienden a aprovechar diferentes recursos de datos para superar el cuello de botella de la adquisición de datos. Sin embargo, estos modelos se limitaban a desambiguar con los datos para los que el sistema había sido entrenado. Se han explorado además representaciones basadas vectores de palabras (word embeddings) estáticos para 13 abreviaturas clínicas en el corpus UMN en inglés (de la University of Minnesota) utilizando algoritmos de clasificación tradicionales de aprendizaje automático supervisados (un clasificador por cada abreviatura). Se ha llevado a cabo un segundo experimento utilizando un modelo multi-clasificador sobre todo el conjunto de las 75 abreviaturas del corpus UMN basado en un modelo Transformer pre-entrenado. El objetivo ha sido implementar un clasificador multiclase para predecir también abreviaturas raras y no vistas. Se realizó un experimento adicional para siglas científicas en documentos de dominio abierto mediante la aplicación de un enfoque híbrido compuesto por enfoques supervisados y basados en el conocimiento. Así, basándonos en los resultados de esta tesis, el aprendizaje por transferencia (transfer learning) mediante el ajuste (fine-tuning) de un modelo de lenguaje preentrenado podría predecir abreviaturas raras y no vistas sin necesidad de entrenarlas previamente. Un reto pendiente para el trabajo futuro es mejorar el modelo para automatizar la desambiguación de las abreviaturas clínicas en tiempo de ejecución mediante la implementación de modelos de aprendizaje autosupervisados.Programa de Doctorado en Ciencia y Tecnología Informática por la Universidad Carlos III de MadridPresidente: Israel González Carrasco.- Secretario: Leonardo Campillos Llanos.- Vocal: Ana María García Serran

Use of Weighted Finite State Transducers in Part of Speech Tagging

This paper addresses issues in part of speech disambiguation using finite-state transducers and presents two main contributions to the field. One of them is the use of finite-state machines for part of speech tagging. Linguistic and statistical information is represented in terms of weights on transitions in weighted finite-state transducers. Another contribution is the successful combination of techniques -- linguistic and statistical -- for word disambiguation, compounded with the notion of word classes.Comment: uses psfig, ipamac

Unsupervised entity linking using graph-based semantic similarity

Nowadays, the human textual data constitutes a great proportion of the shared information resources such as World Wide Web (WWW). Social networks, news and learning resources as well as Knowledge Bases (KBs) are just the small examples that widely contain the textual data which is used by both human and machine readers. The nature of human languages is highly ambiguous, means that a short portion of a textual context (such as words or phrases) can semantically be interpreted in different ways. A language processor should detect the best interpretation depending on the context in which each word or phrase appears. In case of human readers, the brain is quite proficient in interfering textual data. Human language developed in a way that reflects the innate ability provided by the brain’s neural networks. However, there still exist the moments that the text disambiguation task would remain a hard challenge for the human readers. In case of machine readers, it has been a long-term challenge to develop the ability to do natural language processing and machine learning. Different interpretation can change the broad range of topics and targets. The different in interpretation can cause serious impacts when it is used in critical domains that need high precision. Thus, the correctly inferring the ambiguous words would be highly crucial. To tackle it, two tasks have been developed: Word Sense Disambiguation (WSD) to infer the sense (i.e. meaning) of ambiguous words, when the word has multiple meanings, and Entity Linking (EL) (also called, Named Entity Disambiguation–NED, Named Entity Recognition and Disambiguation–NERD, or Named Entity Normalization–NEN) which is used to explore the correct reference of Named Entity (NE) mentions occurring in documents. The solution to these problems impacts other computer-related writing, such as discourse, improving relevance of search engines, anaphora resolution, coherence, and inference. This document summarizes the works towards developing an unsupervised Entity Linking (EL) system using graph-based semantic similarity aiming to disambiguate Named Entity (NE) mentions occurring in a target document. The EL task is highly challenging since each entity can usually be referred to by several NE mentions (synonymy). In addition, a NE mention may be used to indicate distinct entities (polysemy). Thus, much effort is necessary to tackle these challenges. Our EL system disambiguates the NE mentions in several steps. For each step, we have proposed, implemented, and evaluated several approaches. We evaluated our EL system in TAC-KBP4 English EL evaluation framework in which the system input consists of a set of queries, each containing a query name (target NE mention) along with start and end offsets of that mention in the target document. The output is either a NE entry id in a reference Knowledge Base (KB) or a Not-in-KB (NIL) id in the case that system could not find any appropriate entry for that query. At the end, we have analyzed our result in different aspects. To disambiguate query name we apply a graph-based semantic similarity approach to extract the network of the semantic knowledge existing in the content of target document.Este documento es un resumen del trabajo realizado para la construccion de un sistema de Entity Linking (EL) destinado a desambiguar menciones de Entidades Nombradas (Named Entities, NE) que aparecen en un documento de referencia. La tarea de EL presenta una gran dificultad ya que cada entidad puede ser mencionada de varias maneras (sinonimia). Ademas cada mencion puede referirse a mas de una entidad (polisemia). Asi pues, se debe realizar un gran esfuerzo para hacer frente a estos retos. Nuestro sistema de EL lleva a cabo la desambiguacion de las menciones de NE en varias etapas. Para cada etapa hemos propuesto, implementado y evaluado varias aproximaciones. Hemos evaluado nuestro sistema de EL en el marco del TAC-KBP English EL evaluation framework. En este marco la evaluacion se realiza a partir de una entrada que consiste en un conjunto de consultas cada una de las cuales consta de un nombre (query name) que corresponde a una mencion objetivo cuya posicion en un documento de referencia se indica. La salida debe indicar a que entidad en una base de conocimiento (Knowledge Base, KB) corresponde la mencion. En caso de no existir un referente apropiado la respuesta sera Not-in-KB (NIL). La tesis concluye con un analisis pormenorizado de los resultados obtenidos en la evaluacion.Postprint (published version

WikiM: Metapaths based Wikification of Scientific Abstracts

In order to disseminate the exponential extent of knowledge being produced in the form of scientific publications, it would be best to design mechanisms that connect it with already existing rich repository of concepts -- the Wikipedia. Not only does it make scientific reading simple and easy (by connecting the involved concepts used in the scientific articles to their Wikipedia explanations) but also improves the overall quality of the article. In this paper, we present a novel metapath based method, WikiM, to efficiently wikify scientific abstracts -- a topic that has been rarely investigated in the literature. One of the prime motivations for this work comes from the observation that, wikified abstracts of scientific documents help a reader to decide better, in comparison to the plain abstracts, whether (s)he would be interested to read the full article. We perform mention extraction mostly through traditional tf-idf measures coupled with a set of smart filters. The entity linking heavily leverages on the rich citation and author publication networks. Our observation is that various metapaths defined over these networks can significantly enhance the overall performance of the system. For mention extraction and entity linking, we outperform most of the competing state-of-the-art techniques by a large margin arriving at precision values of 72.42% and 73.8% respectively over a dataset from the ACL Anthology Network. In order to establish the robustness of our scheme, we wikify three other datasets and get precision values of 63.41%-94.03% and 67.67%-73.29% respectively for the mention extraction and the entity linking phase