865 research outputs found
Fast branching algorithm for Cluster Vertex Deletion
In the family of clustering problems, we are given a set of objects (vertices
of the graph), together with some observed pairwise similarities (edges). The
goal is to identify clusters of similar objects by slightly modifying the graph
to obtain a cluster graph (disjoint union of cliques). Hueffner et al. [Theory
Comput. Syst. 2010] initiated the parameterized study of Cluster Vertex
Deletion, where the allowed modification is vertex deletion, and presented an
elegant O(2^k * k^9 + n * m)-time fixed-parameter algorithm, parameterized by
the solution size. In our work, we pick up this line of research and present an
O(1.9102^k * (n + m))-time branching algorithm
Fast Parallel Fixed-Parameter Algorithms via Color Coding
Fixed-parameter algorithms have been successfully applied to solve numerous
difficult problems within acceptable time bounds on large inputs. However, most
fixed-parameter algorithms are inherently \emph{sequential} and, thus, make no
use of the parallel hardware present in modern computers. We show that parallel
fixed-parameter algorithms do not only exist for numerous parameterized
problems from the literature -- including vertex cover, packing problems,
cluster editing, cutting vertices, finding embeddings, or finding matchings --
but that there are parallel algorithms working in \emph{constant} time or at
least in time \emph{depending only on the parameter} (and not on the size of
the input) for these problems. Phrased in terms of complexity classes, we place
numerous natural parameterized problems in parameterized versions of AC. On
a more technical level, we show how the \emph{color coding} method can be
implemented in constant time and apply it to embedding problems for graphs of
bounded tree-width or tree-depth and to model checking first-order formulas in
graphs of bounded degree
The Graph Motif problem parameterized by the structure of the input graph
The Graph Motif problem was introduced in 2006 in the context of biological
networks. It consists of deciding whether or not a multiset of colors occurs in
a connected subgraph of a vertex-colored graph. Graph Motif has been mostly
analyzed from the standpoint of parameterized complexity. The main parameters
which came into consideration were the size of the multiset and the number of
colors. Though, in the many applications of Graph Motif, the input graph
originates from real-life and has structure. Motivated by this prosaic
observation, we systematically study its complexity relatively to graph
structural parameters. For a wide range of parameters, we give new or improved
FPT algorithms, or show that the problem remains intractable. For the FPT
cases, we also give some kernelization lower bounds as well as some ETH-based
lower bounds on the worst case running time. Interestingly, we establish that
Graph Motif is W[1]-hard (while in W[P]) for parameter max leaf number, which
is, to the best of our knowledge, the first problem to behave this way.Comment: 24 pages, accepted in DAM, conference version in IPEC 201
PACE solver description: The KaPoCE exact cluster editing algorithm
The cluster editing problem is to transform an input graph into a cluster graph by performing a minimum number of edge editing operations. A cluster graph is a graph where each connected component is a clique. An edit operation can be either adding a new edge or removing an existing edge. In this write-up we outline the core techniques used in the exact cluster editing algorithm of the KaPoCE framework (contains also a heuristic solver), submitted to the exact track of the 2021 PACE challenge
PACE Solver Description: The KaPoCE Exact Cluster Editing Algorithm
The cluster editing problem is to transform an input graph into a cluster graph by performing a minimum number of edge editing operations. A cluster graph is a graph where each connected component is a clique. An edit operation can be either adding a new edge or removing an existing edge. In this write-up we outline the core techniques used in the exact cluster editing algorithm of the KaPoCE framework (contains also a heuristic solver), submitted to the exact track of the 2021 PACE challenge
Applying a Cut-Based Data Reduction Rule for Weighted Cluster Editing in Polynomial Time
Given an undirected graph, the task in Cluster Editing is to insert and delete a minimum number of edges to obtain a cluster graph, that is, a disjoint union of cliques. In the weighted variant each vertex pair comes with a weight and the edge modifications have to be of minimum overall weight. In this work, we provide the first polynomial-time algorithm to apply the following data reduction rule of Böcker et al. [Algorithmica, 2011] for Weighted Cluster Editing: For a graph , merge a vertex set into a single vertex if the minimum cut of G[S] is at least the combined cost of inserting all missing edges within G[S] plus the cost of cutting all edges from S to the rest of the graph. Complementing our theoretical findings, we experimentally demonstrate the effectiveness of the data reduction rule, shrinking real-world test instances from the PACE Challenge 2021 by around 24% while previous heuristic implementations of the data reduction rule only achieve 8%
- …